Genome: Bacillus thuringiensis MC28 (NC_018693.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 5553-5665 (+)TPP5894-6608 (+)MC28_0005

Aminopyrimidine aminohydrolase 		MC28_0005Single gene

DOOR ID: 3940066		MC28_0005 View Structure
2 5726-5829 (+)TPP5894-6608 (+)MC28_0005

Aminopyrimidine aminohydrolase 		MC28_0005Single gene

DOOR ID: 3940066		MC28_0005 View Structure
3 13725-13873 (+)ydaO-yuaA13966-14353 (+)MC28_0015

Group-specific protein		MC28_0015Operon

DOOR ID: 1303376		MC28_0017 (kdpA),
MC28_0016,
MC28_0015		 View Structure
4 14862-15007 (+)ydaO-yuaA15306-16974 (+)kdpB

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		MC28_0018Operon

DOOR ID: 1303377		MC28_0021,
MC28_0020,
MC28_0019 (kdpC),
MC28_0018 (kdpB)		 View Structure
5 28162-28267 (-)SAM26960-28073 (-)MC28_0029

Ribose ABC transporter		MC28_0029Operon

DOOR ID: 1303379		MC28_0029,
MC28_0028,
MC28_0027		 View Structure
6 112017-112198 (-)lysine110445-111870 (-)MC28_0125

Arginine/ornithine antiporter		MC28_0125Operon

DOOR ID: 1303402		MC28_0125,
MC28_0124		 View Structure
7 276076-276168 (+)c-di-GMP-I276302-284609 (+)MC28_0293

Collagen adhesion protein		MC28_0293single gene

DOOR ID: 3940205		MC28_0293 View Structure
8 518248-518412 (-)yybP-ykoY517367-518156 (-)MC28_0538

TerC-like protein		MC28_0538Single gene

DOOR ID: 3940338		MC28_0538 View Structure
9 546350-546393 (+)PreQ1546477-547149 (+)MC28_0571

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		MC28_0571Operon

DOOR ID: 1303477		MC28_0571,
MC28_0572,
MC28_0573,
MC28_0574		 View Structure
10 618250-618431 (+)lysine618578-619928 (+)MC28_0656

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		MC28_0656Single gene

DOOR ID: 3940393		MC28_0656 View Structure
11 620095-620203 (+)SAM620275-620419 (+)MC28_0657

MC28_0657Single gene

DOOR ID: 3940394		MC28_0657 View Structure
12 632959-633064 (+)SAM633099-634476 (+)MC28_0671

Na+ antiporter NhaC		MC28_0671Single gene

DOOR ID: 3940400		MC28_0671 View Structure
13 678327-678466 (+)FMN678601-679207 (+)MC28_0716

Riboflavin transporter		MC28_0716Single gene

DOOR ID: 3940428		MC28_0716 View Structure
14 769823-769924 (+)purine770031-770625 (+)MC28_0820

Xanthine phosphoribosyltransferase (XPRTase) (2)		MC28_0820Operon

DOOR ID: 1303521		MC28_0819,
MC28_0820,
MC28_0821		 View Structure
15 784405-784568 (+)ykoK784914-785640 (+)MC28_0834

Cation transporter		MC28_0834Single gene

DOOR ID: 3940476		MC28_0834 View Structure
16 806613-806657 (+)PreQ1806663-807149 (+)MC28_0844

Citrulline related protein		MC28_0844Single gene

DOOR ID: 3940483		MC28_0844 View Structure
17 948069-948255 (-)lysine946637-947867 (-)MC28_1001

Aspartokinase 		MC28_1001Single gene

DOOR ID: 3940549		MC28_1001 View Structure
18 1006676-1006823 (+)ydaO-yuaA1006967-1008794 (+)MC28_1059

Amino acid permease		MC28_1059Single gene

DOOR ID: 3940587		MC28_1059 View Structure
19 1056698-1056874 (-)ykoK1055381-1056509 (-)MC28_1100

Cell division protein ftsW		MC28_1100Single gene

DOOR ID: 3940613		MC28_1100 View Structure
20 1057385-1057552 (+)ykoK1057826-1059155 (+)MC28_1101

Magnesium transporter MgtE		MC28_1101Single gene

DOOR ID: 3940614		MC28_1101 View Structure
21 1544586-1544706 (-)glycine1543110-1544478 (-)MC28_1587

Amino acid carrier protein		MC28_1587Single gene

DOOR ID: 3940866		MC28_1587 View Structure
22 1781014-1781119 (+)TPP1781246-1781936 (+)MC28_1809

Aminopyrimidine aminohydrolase 		MC28_1809Single gene

DOOR ID: 3940993		MC28_1809 View Structure
23 1816545-1816660 (+)SAM1816799-1817348 (+)MC28_1843

MC28_1843Operon

DOOR ID: 1303689		MC28_1843,
MC28_1844,
MC28_1845		 View Structure
24 2193534-2193726 (+)lysine2193838-2195305 (+)MC28_2252

Lysine-specific permease		MC28_2252Single gene

DOOR ID: 3941243		MC28_2252 View Structure
25 2288265-2288366 (-)SAM2286970-2288200 (-)MC28_2345

Peptidase M20 domain-containing protein 2		MC28_2345Single gene

DOOR ID: 3941286		MC28_2345 View Structure
26 2387492-2387590 (-)SAM2387130-2387343 (-)MC28_2443

MC28_2443Single gene

DOOR ID: 3941341		MC28_2443 View Structure
27 2400656-2400759 (-)purine2399596-2400532 (-)MC28_2455

Purine or other phosphorylase family 1		MC28_2455Single gene

DOOR ID: 3941349		MC28_2455 View Structure
28 2430050-2430192 (+)ydaO-yuaA2430504-2431053 (-)MC28_2491

UbiE/COQ5 methyltransferase		MC28_2491Operon

DOOR ID: 1303798		MC28_2491,
MC28_2492,
MC28_2493		 View Structure
29 2918832-2918933 (-)purine2917872-2918559 (-)MC28_2963

GntR family transcriptional regulator		MC28_2963Operon

DOOR ID: 1303882		MC28_2962,
MC28_2963		 View Structure
30 3218604-3218793 (+)cobalamin3218920-3221209 (+)MC28_3293

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		MC28_3293Single gene

DOOR ID: 3941738		MC28_3293 View Structure
31 3249416-3249556 (-)SAM3248143-3249325 (-)MC28_3325

Methylthioribose kinase (MTR kinase) (00)		MC28_3325Operon

DOOR ID: 1303952		MC28_3324,
MC28_3325		 View Structure
32 3251750-3251855 (+)SAM3251919-3253164 (+)MC28_3328

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		MC28_3328Operon

DOOR ID: 1303953		MC28_3328,
MC28_3329,
MC28_3330,
MC28_3331		 View Structure
33 3314739-3314882 (+)FMN3315162-3316302 (+)MC28_3402

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		MC28_3402Operon

DOOR ID: 1303962		MC28_3402,
MC28_3403,
MC28_3404,
MC28_3405		 View Structure
34 3344799-3344966 (+)ykoK3345276-3348003 (+)MC28_3435

Magnesium-transporting ATPase; P-type 1		MC28_3435Single gene

DOOR ID: 3941806		MC28_3435 View Structure
35 3442987-3443096 (-)SAM3441083-3442916 (-)MC28_3547

Methylenetetrahydrofolate reductase		MC28_3547Operon

DOOR ID: 1303990		MC28_3545,
MC28_3546,
MC28_3547		 View Structure
36 3443299-3443408 (+)SAM3444611-3445775 (+)MC28_3549

Cys/Met metabolism PLP-dependent enzyme		MC28_3549Operon

DOOR ID: 1303991		MC28_3548,
MC28_3549		 View Structure
37 3930247-3930368 (-)SAM3928877-3930077 (-)MC28_4053

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		MC28_4053Single gene

DOOR ID: 3942072		MC28_4053 View Structure
38 3965846-3965947 (+)TPP3966012-3966702 (+)MC28_4096

Thiamine transporter		MC28_4096Single gene

DOOR ID: 3942096		MC28_4096 View Structure
39 4120944-4121051 (-)SAM4119608-4120634 (-)whiA

Methionine import ATP-binding protein MetN 		MC28_4251Operon

DOOR ID: 1304142		MC28_4248 (clpP2),
MC28_4249,
MC28_4250,
MC28_4251 (whiA)		 View Structure
40 4200071-4200130 (+)fluoride4200184-4200589 (+)MC28_4337

Putative fluoride ion transporter CrcB		MC28_4337Operon

DOOR ID: 1304162		MC28_4337,
MC28_4338		 View Structure
41 4322011-4322126 (-)TPP4320136-4321897 (-)MC28_4461

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		MC28_4461Single gene

DOOR ID: 3942263		MC28_4461 View Structure
42 4509701-4509805 (-)SAM4508309-4509608 (-)MC28_4639

O-acetylhomoserine sulfhydrylase		MC28_4639Operon

DOOR ID: 1304218		MC28_4638,
MC28_4639		 View Structure
43 4753481-4753636 (+)glmS4753828-4755631 (+)rocA

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		MC28_4870Single gene

DOOR ID: 3942430		MC28_4870 (rocA) View Structure
44 4763029-4763143 (-)SAM4762131-4762944 (-)MC28_4878

Lipoprotein		MC28_4878Operon

DOOR ID: 1304264		MC28_4877,
MC28_4878		 View Structure
45 4771448-4771553 (+)SAM4771689-4772607 (+)MC28_4887

Oligopeptide transport system permease protein oppB		MC28_4887Operon

DOOR ID: 1304266		MC28_4887,
MC28_4888,
MC28_4889,
MC28_4890,
MC28_4891		 View Structure
46 4782845-4782949 (-)SAM4781068-4782709 (-)MC28_4895

Oligopeptide transporter; periplasmic-binding protein		MC28_4895Single gene

DOOR ID: 3942443		MC28_4895 View Structure
47 4849038-4849139 (+)purine4849294-4850842 (+)MC28_4957

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		MC28_4957Single gene

DOOR ID: 3942475		MC28_4957 View Structure
48 4861180-4861281 (+)purine4861409-4862735 (+)MC28_4970

Xanthine/uracil permease family protein		MC28_4970Single gene

DOOR ID: 3942479		MC28_4970 View Structure
49 4930410-4930511 (+)purine4930645-4931107 (+)MC28_5002

MC28_5002Operon

DOOR ID: 1304285		MC28_5002,
MC28_5003,
MC28_5004,
MC28_5005,
MC28_5006,
MC28_5007,
MC28_5008,
MC28_5009,
MC28_5010,
MC28_5011,
MC28_5012,
MC28_5013,
MC28_5014		 View Structure
50 4955320-4955424 (+)SAM4955548-4956568 (+)MC28_5026

Methionine import ATP-binding protein MetN 		MC28_5026Operon

DOOR ID: 1304288		MC28_5026,
MC28_5027,
MC28_5028		 View Structure
51 4977771-4977872 (-)purine4976371-4977568 (-)MC28_5047

Pyrimidine nucleoside transporter		MC28_5047Single gene

DOOR ID: 3942512		MC28_5047 View Structure
52 5009165-5009277 (-)SAM5008446-5009124 (-)MC28_5076

Metal-dependent hydrolase		MC28_5076Single gene

DOOR ID: 3942531		MC28_5076 View Structure
53 5039379-5039488 (+)TPP5039560-5040370 (+)MC28_5099

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		MC28_5099Operon

DOOR ID: 1304299		MC28_5099,
MC28_5100		 View Structure
54 5044025-5044109 (+)c-di-GMP-I5044245-5045988 (+)perR

Methyl-accepting chemotaxis protein		MC28_5103single gene

DOOR ID: 3942548		MC28_5103 (perR) View Structure
55 5049756-5049857 (+)TPP5049958-5050279 (+)MC28_5105

MC28_5105Operon

DOOR ID: 1304300		MC28_5105,
MC28_5106,
MC28_5107,
MC28_5108		 View Structure