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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
37464-37524
(-)
fluoride
36106-37393 (-)
eno
Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
R0052_00220
Single gene
DOOR ID:
3900671
R0052_00220
(eno)
View Structure
2
119627-119800
(-)
lysine
117907-119521 (-)
R0052_00670
Amino acid ABC transporter permease protein
R0052_00670
Operon
DOOR ID:
1145808
R0052_00665,
R0052_00670
View Structure
3
216793-216956
(+)
ykoK
217042-219706 (+)
R0052_01205
Cation transporting P-type ATPase
R0052_01205
Operon
DOOR ID:
1145829
R0052_01205,
R0052_01210,
R0052_01215,
R0052_01220,
R0052_01225
(ksgA)
View Structure
4
246636-246733
(-)
purine
245982-246561 (-)
R0052_01355
Xanthine phosphoribosyltransferase (XPRTase) (2)
R0052_01355
Operon
DOOR ID:
1145835
R0052_01350,
R0052_01355
View Structure
5
325304-325471
(+)
ykoK
325547-328226 (+)
R0052_01835
Magnesium-translocating P-type ATPase
R0052_01835
Single gene
DOOR ID:
3900781
R0052_01835
View Structure
6
480282-480370
(+)
SMK_box
481585-483046 (+)
R0052_02700
Permease of the major facilitator superfamily protein
R0052_02700
Operon
DOOR ID:
1145880
R0052_02695,
R0052_02700
View Structure
7
1147773-1147831
(-)
fluoride
1147348-1147732 (-)
R0052_06590
Putative fluoride ion transporter CrcB
R0052_06590
Operon
DOOR ID:
1146009
R0052_06585,
R0052_06590
View Structure
8
1174039-1174151
(-)
FMN
1173267-1173957 (-)
R0052_06745
Riboflavin transporter
R0052_06745
Single gene
DOOR ID:
3901056
R0052_06745
View Structure
9
1294508-1294683
(-)
lysine
1293098-1294415 (-)
R0052_07400
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
R0052_07400
Operon
DOOR ID:
1146038
R0052_07370,
R0052_07375,
R0052_07380,
R0052_07385,
R0052_07390,
R0052_07395,
R0052_07400
View Structure
10
1585630-1585720
(-)
TPP
1585002-1585581 (-)
R0052_08935
Cobalt ABC transporter permease
R0052_08935
Single gene
DOOR ID:
3901181
R0052_08935
View Structure
11
1825682-1825850
(-)
cobalamin
1823072-1825490 (-)
R0052_10235
R0052_10235
Single gene
DOOR ID:
3901283
R0052_10235
View Structure
12
2110613-2110710
(+)
purine
2110795-2112100 (+)
R0052_11875
Xanthine/uracil permease family protein
R0052_11875
Operon
DOOR ID:
1146188
R0052_11875,
R0052_11880,
R0052_11885,
R0052_11890,
R0052_11895,
R0052_11900
View Structure
Genome:
Lactobacillus helveticus R0052
(
NC_018528.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"37464-37524";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:11:"36106-37393";i:10;s:1:"-";i:11;s:3:"eno";i:12;s:80:"Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)";i:13;s:11:"R0052_00220";i:14;s:11:"Single gene";i:15;s:7:"3900671";i:16;s:16:"R0052_00220(eno)";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"119627-119800";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"117907-119521";i:10;s:1:"-";i:11;s:11:"R0052_00670";i:12;s:43:"Amino acid ABC transporter permease protein";i:13;s:11:"R0052_00670";i:14;s:6:"Operon";i:15;s:7:"1145808";i:16;s:23:"R0052_00665;R0052_00670";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"216793-216956";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"217042-219706";i:10;s:1:"+";i:11;s:11:"R0052_01205";i:12;s:33:"Cation transporting P-type ATPase";i:13;s:11:"R0052_01205";i:14;s:6:"Operon";i:15;s:7:"1145829";i:16;s:65:"R0052_01205;R0052_01210;R0052_01215;R0052_01220;R0052_01225(ksgA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"246636-246733";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"245982-246561";i:10;s:1:"-";i:11;s:11:"R0052_01355";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:11:"R0052_01355";i:14;s:6:"Operon";i:15;s:7:"1145835";i:16;s:23:"R0052_01350;R0052_01355";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"325304-325471";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"325547-328226";i:10;s:1:"+";i:11;s:11:"R0052_01835";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:11:"R0052_01835";i:14;s:11:"Single gene";i:15;s:7:"3900781";i:16;s:11:"R0052_01835";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"480282-480370";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"481585-483046";i:10;s:1:"+";i:11;s:11:"R0052_02700";i:12;s:53:"Permease of the major facilitator superfamily protein";i:13;s:11:"R0052_02700";i:14;s:6:"Operon";i:15;s:7:"1145880";i:16;s:23:"R0052_02695;R0052_02700";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1147773-1147831";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1147348-1147732";i:10;s:1:"-";i:11;s:11:"R0052_06590";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"R0052_06590";i:14;s:6:"Operon";i:15;s:7:"1146009";i:16;s:23:"R0052_06585;R0052_06590";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1174039-1174151";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1173267-1173957";i:10;s:1:"-";i:11;s:11:"R0052_06745";i:12;s:22:"Riboflavin transporter";i:13;s:11:"R0052_06745";i:14;s:11:"Single gene";i:15;s:7:"3901056";i:16;s:11:"R0052_06745";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1294508-1294683";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1293098-1294415";i:10;s:1:"-";i:11;s:11:"R0052_07400";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:11:"R0052_07400";i:14;s:6:"Operon";i:15;s:7:"1146038";i:16;s:83:"R0052_07370;R0052_07375;R0052_07380;R0052_07385;R0052_07390;R0052_07395;R0052_07400";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1585630-1585720";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1585002-1585581";i:10;s:1:"-";i:11;s:11:"R0052_08935";i:12;s:31:"Cobalt ABC transporter permease";i:13;s:11:"R0052_08935";i:14;s:11:"Single gene";i:15;s:7:"3901181";i:16;s:11:"R0052_08935";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1825682-1825850";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1823072-1825490";i:10;s:1:"-";i:11;s:11:"R0052_10235";i:12;s:0:"";i:13;s:11:"R0052_10235";i:14;s:11:"Single gene";i:15;s:7:"3901283";i:16;s:11:"R0052_10235";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_018528.1";i:2;s:31:"Lactobacillus helveticus R0052 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2110613-2110710";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2110795-2112100";i:10;s:1:"+";i:11;s:11:"R0052_11875";i:12;s:39:"Xanthine/uracil permease family protein";i:13;s:11:"R0052_11875";i:14;s:6:"Operon";i:15;s:7:"1146188";i:16;s:71:"R0052_11875;R0052_11880;R0052_11885;R0052_11890;R0052_11895;R0052_11900";i:17;s:0:"";i:18;s:15:"View Structure ";}}
