Genome: Pseudomonas putida DOT-T1E (NC_018220.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1079467-1079606 (+)yybP-ykoY1079694-1080279 (+)T1E_0954

T1E_0954Single gene

DOOR ID: 3879733		T1E_0954 View Structure
2 1181252-1181366 (-)TPP1180525-1181173 (-)T1E_1037

Aminopyrimidine aminohydrolase 		T1E_1037Operon

DOOR ID: 1135681		T1E_1036,
T1E_1037		 View Structure
3 1288816-1288912 (-)SAH1287385-1288795 (-)T1E_1133

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		T1E_1133Single gene

DOOR ID: 3879805		T1E_1133 View Structure
4 1362750-1362856 (+)TPP1363012-1364893 (+)T1E_1189

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		T1E_1189Single gene

DOOR ID: 3879829		T1E_1189 View Structure
5 1691937-1691988 (-)mini-ykkC1691593-1691911 (-)T1E_1528

T1E_1528Single gene

DOOR ID: 3879954		T1E_1528 View Structure
6 1870462-1870679 (+)cobalamin1870700-1871846 (+)T1E_1712

Cobalamin biosynthesis protein CobW		T1E_1712Operon

DOOR ID: 1135812		T1E_1712,
T1E_1713 (cobN),
T1E_1714 (chlI),
T1E_1715		 View Structure
7 4011519-4011740 (-)cobalamin4010787-4011399 (-)cobO

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		T1E_3650Operon

DOOR ID: 1136221		T1E_3636 (gpwA),
T1E_3637,
T1E_3638,
T1E_3639,
T1E_3640,
T1E_3641,
T1E_3642,
T1E_3643 (cobT),
T1E_3644 (cobU),
T1E_3645 (cobQ),
T1E_3646 (cobC),
T1E_3647 (cobD),
T1E_3648,
T1E_3649 (cobB),
T1E_3650 (cobO)		 View Structure
8 5654195-5654418 (+)cobalamin5654510-5654699 (+)T1E_5199

Cobalt transporter; subunit CbtB		T1E_5199Operon

DOOR ID: 1136548		T1E_5199,
T1E_5200,
T1E_5201,
T1E_5202 (cobM)		 View Structure
9 5718714-5718922 (+)cobalamin5718985-5721157 (+)T1E_5259

TonB-dependent siderophore receptor		T1E_5259Operon

DOOR ID: 1136560		T1E_5259,
T1E_5260		 View Structure
10 5722470-5722668 (+)cobalamin5722778-5723789 (+)T1E_5261

Periplasmic binding protein		T1E_5261Operon

DOOR ID: 1136561		T1E_5261,
T1E_5262 (yvrB),
T1E_5263,
T1E_5264		 View Structure
11 6248992-6249133 (-)FMN6248260-6248911 (-)T1E_5745

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		T1E_5745Operon

DOOR ID: 1136673		T1E_5743 (ispA),
T1E_5744,
T1E_5745		 View Structure