Genome: Desulfosporosinus acidiphilus SJ4 (NC_018068.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 247807-247948 (+)ydaO-yuaA248059-249424 (+)Desaci_0247

Citrate synthase		Desaci_0247Operon

DOOR ID: 1122567		Desaci_0247,
Desaci_0248		 View Structure
2 253452-253560 (+)TPP253716-254010 (+)Desaci_0251

Desaci_0251Operon

DOOR ID: 1122568		Desaci_0251,
Desaci_0252		 View Structure
3 562270-562461 (+)cobalamin562591-563611 (+)Desaci_0561

Nickel/cobalt efflux system		Desaci_0561Single gene

DOOR ID: 3855858		Desaci_0561 View Structure
4 588078-588205 (+)SAM588382-589579 (+)Desaci_0590

Desaci_0590Operon

DOOR ID: 1122629		Desaci_0590,
Desaci_0591,
Desaci_0592		 View Structure
5 642806-642961 (+)glmS643117-644941 (+)Desaci_0638

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desaci_0638Single gene

DOOR ID: 3855891		Desaci_0638 View Structure
6 737548-737657 (-)SAM736072-737362 (-)Desaci_0712

O-acetylhomoserine sulfhydrylase (9)		Desaci_0712Single gene

DOOR ID: 3855923		Desaci_0712 View Structure
7 752629-752737 (-)c-di-GMP-I751250-752525 (-)Desaci_0723

Na+/H+ antiporter NhaD-like permease		Desaci_0723single gene

DOOR ID: 3855932		Desaci_0723 View Structure
8 817709-817837 (+)MOCO818154-819126 (+)Desaci_0780

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		Desaci_0780Operon

DOOR ID: 1122666		Desaci_0780,
Desaci_0781		 View Structure
9 840616-840700 (+)c-di-GMP-I841233-842565 (+)Desaci_0805

Signal transduction histidine kinase; nitrogen specific		Desaci_0805single gene

DOOR ID: 3855956		Desaci_0805 View Structure
10 879108-879192 (+)c-di-GMP-II879477-880509 (+)Desaci_0831

Signal transduction histidine kinase; nitrogen specific		Desaci_0831Single gene

DOOR ID: 3855972		Desaci_0831 View Structure
11 911851-911952 (+)purine912103-912601 (+)Desaci_0865

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Desaci_0865Operon

DOOR ID: 1122683		Desaci_0865,
Desaci_0866		 View Structure
12 911937-912027 (+)ykkC-yxkD912103-912601 (+)Desaci_0865

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Desaci_0865Operon

DOOR ID: 1122683		Desaci_0865,
Desaci_0866		 View Structure
13 1074728-1074829 (+)purine1075051-1075855 (+)Desaci_1021

Aerobic-type carbon monoxide dehydrogenase; middle subunit CoxM/CutM-like protein		Desaci_1021Operon

DOOR ID: 1122710		Desaci_1021,
Desaci_1022,
Desaci_1023		 View Structure
14 1353609-1353690 (+)c-di-GMP-I1353779-1354226 (+)Desaci_1263

Chemotaxis signal transduction protein		Desaci_1263operon

DOOR ID: 1122759		Desaci_1263,
Desaci_1264		 View Structure
15 1542579-1542753 (+)ykoK1542834-1543023 (+)Desaci_1482

Desaci_1482Operon

DOOR ID: 1122799		Desaci_1482,
Desaci_1483,
Desaci_1484		 View Structure
16 1585420-1585607 (+)cobalamin1585741-1586440 (+)Desaci_1525

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desaci_1525Operon

DOOR ID: 1122804		Desaci_1525,
Desaci_1526,
Desaci_1527,
Desaci_1528		 View Structure
17 1613869-1614044 (-)lysine1612354-1613758 (-)Desaci_1554

Amino acid transporter		Desaci_1554Single gene

DOOR ID: 3856247		Desaci_1554 View Structure
18 1763939-1764021 (+)c-di-GMP-I1764139-1765288 (+)Desaci_1707

Methyl-accepting chemotaxis protein		Desaci_1707operon

DOOR ID: 1122832		Desaci_1707,
Desaci_1708		 View Structure
19 1771297-1771431 (-)ydaO-yuaA1769847-1771293 (-)Desaci_1714

Cell wall-associated hydrolase; invasion-associated protein		Desaci_1714Single gene

DOOR ID: 3856319		Desaci_1714 View Structure
20 1842042-1842192 (-)FMN1840916-1841966 (-)Desaci_1780

Putative permease; DMT superfamily		Desaci_1780Single gene

DOOR ID: 3856344		Desaci_1780 View Structure
21 1907681-1907776 (+)Nico1907830-1908193 (+)Desaci_1848

Desaci_1848Operon

DOOR ID: 1122861		Desaci_1848,
Desaci_1849		 View Structure
22 1970397-1970572 (+)lysine1970654-1971545 (+)Desaci_1902

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Desaci_1902Single gene

DOOR ID: 3856387		Desaci_1902 View Structure
23 2132748-2132847 (+)purine2132917-2133760 (+)Desaci_2060

Aerobic-type carbon monoxide dehydrogenase; middle subunit CoxM/CutM-like protein		Desaci_2060Operon

DOOR ID: 1122904		Desaci_2060,
Desaci_2061,
Desaci_2062,
Desaci_2063,
Desaci_2064		 View Structure
24 2202163-2202319 (+)ykoK2202569-2203814 (+)Desaci_2140

Mg/Co/Ni transporter MgtE with CBS domain		Desaci_2140Operon

DOOR ID: 1122920		Desaci_2140,
Desaci_2141		 View Structure
25 2465275-2465387 (+)TPP2465467-2466271 (+)Desaci_2367

Phosphomethylpyrimidine kinase		Desaci_2367Operon

DOOR ID: 1122963		Desaci_2367,
Desaci_2368,
Desaci_2369		 View Structure
26 2533572-2533749 (+)cobalamin2533763-2534588 (+)Desaci_2428

Alpha-ribazole kinase 		Desaci_2428Single gene

DOOR ID: 3856605		Desaci_2428 View Structure
27 2540518-2540696 (+)cobalamin2540926-2542165 (+)Desaci_2434

Precorrin-6y C5;15-methyltransferase (Decarboxylating); CbiE subunit;precorrin-6Y C5;15-methyltransferase (Decarboxylating); CbiT subunit (32)		Desaci_2434Operon

DOOR ID: 1122976		Desaci_2434,
Desaci_2435,
Desaci_2436,
Desaci_2437,
Desaci_2438,
Desaci_2439,
Desaci_2440,
Desaci_2441,
Desaci_2442,
Desaci_2443		 View Structure
28 2590274-2590379 (+)TPP2590473-2591847 (+)Desaci_2484

Amidophosphoribosyltransferase (ATase) (4) (Glutamine phosphoribosylpyrophosphate amidotransferase) (GPATase)		Desaci_2484Single gene

DOOR ID: 3856628		Desaci_2484 View Structure
29 2591875-2591977 (+)TPP2592131-2593403 (+)Desaci_2485

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Desaci_2485Operon

DOOR ID: 1122983		Desaci_2485,
Desaci_2486,
Desaci_2487,
Desaci_2488,
Desaci_2489,
Desaci_2490		 View Structure
30 2604875-2604964 (+)c-di-GMP-I2605210-2606398 (+)Desaci_2500

Arabinose efflux permease family protein		Desaci_2500single gene

DOOR ID: 3856634		Desaci_2500 View Structure
31 2616850-2617023 (+)cobalamin2617367-2618666 (+)Desaci_2510

Hydroxymethylpyrimidine synthase		Desaci_2510Operon

DOOR ID: 1122986		Desaci_2510,
Desaci_2511		 View Structure
32 2782435-2782490 (-)fluoride2782015-2782387 (-)Desaci_2664

Putative fluoride ion transporter CrcB		Desaci_2664Single gene

DOOR ID: 3856706		Desaci_2664 View Structure
33 2984343-2984483 (+)ydaO-yuaA2984486-2985233 (+)Desaci_2851

Cell wall-associated hydrolase; invasion-associated protein		Desaci_2851Single gene

DOOR ID: 3856784		Desaci_2851 View Structure
34 2999615-2999697 (-)c-di-GMP-I2998296-2999505 (-)Desaci_2862

Putative domain HDIG-containing protein		Desaci_2862single gene

DOOR ID: 3856792		Desaci_2862 View Structure
35 3126227-3126340 (+)FMN3126493-3127666 (+)Desaci_2980

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desaci_2980Operon

DOOR ID: 1123070		Desaci_2980,
Desaci_2981,
Desaci_2982,
Desaci_2983		 View Structure
36 3279416-3279549 (-)ydaO-yuaA3278731-3279412 (-)Desaci_3138

Cell wall-associated hydrolase; invasion-associated protein		Desaci_3138Single gene

DOOR ID: 3856920		Desaci_3138 View Structure
37 3401224-3401321 (-)ykkC-yxkD3400240-3401140 (-)Desaci_3255

Branched-chain-amino-acid aminotransferase (BCAT) (2)		Desaci_3255Operon

DOOR ID: 1123123		Desaci_3249,
Desaci_3250,
Desaci_3251,
Desaci_3252,
Desaci_3253,
Desaci_3254,
Desaci_3255		 View Structure
38 3437887-3438078 (-)lysine3436435-3437770 (-)Desaci_3297

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Desaci_3297Single gene

DOOR ID: 3856972		Desaci_3297 View Structure
39 3555589-3555765 (-)cobalamin3553962-3555507 (-)Desaci_3409

ATPase component of various ABC-type transport systems with duplicated ATPase domain		Desaci_3409Operon

DOOR ID: 1123156		Desaci_3404,
Desaci_3405,
Desaci_3406,
Desaci_3407,
Desaci_3408,
Desaci_3409		 View Structure
40 3557014-3557191 (-)cobalamin3555796-3556915 (-)Desaci_3410

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Desaci_3410Single gene

DOOR ID: 3856993		Desaci_3410 View Structure
41 3897827-3897934 (-)glycine3896419-3897514 (-)Desaci_3735

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Desaci_3735Operon

DOOR ID: 1123221		Desaci_3731,
Desaci_3732,
Desaci_3733,
Desaci_3734,
Desaci_3735		 View Structure
42 4076735-4076792 (-)ydaO-yuaA4076074-4076521 (-)Desaci_3916

Desaci_3916Single gene

DOOR ID: 3857119		Desaci_3916 View Structure
43 4185428-4185569 (-)MOCO4184522-4185302 (-)Desaci_4023

Molybdate ABC transporter; permease protein		Desaci_4023Operon

DOOR ID: 1123284		Desaci_4020,
Desaci_4021,
Desaci_4022,
Desaci_4023		 View Structure
44 4371642-4371725 (+)c-di-GMP-I4371826-4372003 (+)Desaci_4218

Uncharacterized protein		Desaci_4218single gene

DOOR ID: 3857211		Desaci_4218 View Structure
45 4400738-4400822 (-)c-di-GMP-I4400596-4400734 (-)Desaci_4254

Uncharacterized protein		Desaci_4254operon

DOOR ID: 1123329		Desaci_4253,
Desaci_4254		 View Structure
46 4466901-4466994 (-)ykkC-yxkD4465242-4466835 (-)Desaci_4319

2-isopropylmalate synthase/homocitrate synthase family protein		Desaci_4319Single gene

DOOR ID: 3857250		Desaci_4319 View Structure
47 4499151-4499235 (-)c-di-GMP-I4497443-4499081 (-)Desaci_4345

Ig-like domain-containing surface protein		Desaci_4345operon

DOOR ID: 1123347		Desaci_4344,
Desaci_4345		 View Structure
48 4718897-4718983 (+)c-di-GMP-I4719116-4719497 (+)Desaci_4525

Response regulator with CheY-like receiver; AAA-type ATPase; and DNA-binding domains		Desaci_4525single gene

DOOR ID: 3857326		Desaci_4525 View Structure
49 4877760-4877925 (+)ykoK4877927-4878155 (+)Desaci_4672

Desaci_4672Operon

DOOR ID: 1123416		Desaci_4672,
Desaci_4673		 View Structure
50 4883359-4883443 (+)c-di-GMP-I4883518-4884655 (+)Desaci_4681

HD-GYP domain-containing protein		Desaci_4681single gene

DOOR ID: 3857390		Desaci_4681 View Structure
51 4886982-4887062 (-)c-di-GMP-I4885128-4886898 (-)Desaci_4684

Methyl-accepting chemotaxis protein		Desaci_4684single gene

DOOR ID: 3857391		Desaci_4684 View Structure