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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
848879-849087
(-)
ydaO-yuaA
848052-848865 (-)
W7S_04265
W7S_04265
Single gene
DOOR ID:
3796431
W7S_04265
View Structure
2
1163572-1163818
(-)
cobalamin
1161150-1163421 (-)
W7S_05705
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
W7S_05705
Single gene
DOOR ID:
3796546
W7S_05705
View Structure
3
1241540-1241722
(-)
cobalamin
1239728-1241405 (-)
W7S_06040
PPE family protein
W7S_06040
Single gene
DOOR ID:
3796571
W7S_06040
View Structure
4
2504920-2505011
(+)
SAH
2505025-2508814 (+)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
W7S_11480
Single gene
DOOR ID:
3796968
W7S_11480
(metH)
View Structure
5
2863391-2863488
(-)
glycine
2860385-2863211 (-)
W7S_13180
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
W7S_13180
Single gene
DOOR ID:
3797095
W7S_13180
View Structure
6
2891175-2891349
(-)
ykoK
2890762-2890882 (-)
W7S_13320
W7S_13320
Operon
DOOR ID:
1095755
W7S_13315,
W7S_13320
View Structure
7
3380614-3380795
(-)
ykoK
3380080-3380326 (-)
W7S_15275
W7S_15275
Single gene
DOOR ID:
3797238
W7S_15275
View Structure
8
4558708-4558770
(+)
ykkC-III
4558783-4559098 (+)
W7S_20835
W7S_20835
operon
DOOR ID:
1096079
W7S_20820,
W7S_20825,
W7S_20830,
W7S_20835
View Structure
9
4565854-4565970
(+)
SAM-IV
4566148-4567537 (+)
W7S_20865
O-acetylhomoserine aminocarboxypropyltransferase (9)
W7S_20865
Operon
DOOR ID:
1096082
W7S_20865,
W7S_20870
(metX)
,
W7S_20875,
W7S_20880
View Structure
10
4750909-4751079
(+)
ykoK
4751369-4751669 (+)
W7S_21780
PE family protein
W7S_21780
Operon
DOOR ID:
1096125
W7S_21780,
W7S_21785,
W7S_21790,
W7S_21795
View Structure
11
5065604-5065714
(+)
TPP
5067383-5068211 (+)
W7S_23295
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase
W7S_23295
Operon
DOOR ID:
1096196
W7S_23290,
W7S_23295,
W7S_23300,
W7S_23305,
W7S_23310
View Structure
12
5088625-5088743
(-)
TPP
5087600-5088623 (-)
W7S_23400
Glycine oxidase ThiO
W7S_23400
Operon
DOOR ID:
1096202
W7S_23385,
W7S_23390
(thiG)
,
W7S_23395,
W7S_23400
View Structure
13
5464941-5465113
(-)
ykoK
5464475-5464634 (-)
W7S_25175
W7S_25175
Operon
DOOR ID:
1096286
W7S_25170,
W7S_25175
View Structure
Genome:
Mycobacterium sp. MOTT36Y
(
NC_017904.1
);
Phylum:
Actinobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"848879-849087";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"848052-848865";i:10;s:1:"-";i:11;s:9:"W7S_04265";i:12;s:0:"";i:13;s:9:"W7S_04265";i:14;s:11:"Single gene";i:15;s:7:"3796431";i:16;s:9:"W7S_04265";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1163572-1163818";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1161150-1163421";i:10;s:1:"-";i:11;s:9:"W7S_05705";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"W7S_05705";i:14;s:11:"Single gene";i:15;s:7:"3796546";i:16;s:9:"W7S_05705";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1241540-1241722";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1239728-1241405";i:10;s:1:"-";i:11;s:9:"W7S_06040";i:12;s:18:"PPE family protein";i:13;s:9:"W7S_06040";i:14;s:11:"Single gene";i:15;s:7:"3796571";i:16;s:9:"W7S_06040";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2504920-2505011";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2505025-2508814";i:10;s:1:"+";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"W7S_11480";i:14;s:11:"Single gene";i:15;s:7:"3796968";i:16;s:15:"W7S_11480(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2863391-2863488";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2860385-2863211";i:10;s:1:"-";i:11;s:9:"W7S_13180";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"W7S_13180";i:14;s:11:"Single gene";i:15;s:7:"3797095";i:16;s:9:"W7S_13180";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2891175-2891349";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2890762-2890882";i:10;s:1:"-";i:11;s:9:"W7S_13320";i:12;s:0:"";i:13;s:9:"W7S_13320";i:14;s:6:"Operon";i:15;s:7:"1095755";i:16;s:19:"W7S_13315;W7S_13320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3380614-3380795";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3380080-3380326";i:10;s:1:"-";i:11;s:9:"W7S_15275";i:12;s:0:"";i:13;s:9:"W7S_15275";i:14;s:11:"Single gene";i:15;s:7:"3797238";i:16;s:9:"W7S_15275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4558708-4558770";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"4558783-4559098";i:10;s:1:"+";i:11;s:9:"W7S_20835";i:12;s:0:"";i:13;s:9:"W7S_20835";i:14;s:6:"operon";i:15;s:7:"1096079";i:16;s:39:"W7S_20820;W7S_20825;W7S_20830;W7S_20835";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4565854-4565970";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4566148-4567537";i:10;s:1:"+";i:11;s:9:"W7S_20865";i:12;s:52:"O-acetylhomoserine aminocarboxypropyltransferase (9)";i:13;s:9:"W7S_20865";i:14;s:6:"Operon";i:15;s:7:"1096082";i:16;s:45:"W7S_20865;W7S_20870(metX);W7S_20875;W7S_20880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4750909-4751079";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"4751369-4751669";i:10;s:1:"+";i:11;s:9:"W7S_21780";i:12;s:17:"PE family protein";i:13;s:9:"W7S_21780";i:14;s:6:"Operon";i:15;s:7:"1096125";i:16;s:39:"W7S_21780;W7S_21785;W7S_21790;W7S_21795";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5065604-5065714";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5067383-5068211";i:10;s:1:"+";i:11;s:9:"W7S_23295";i:12;s:85:"Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase ";i:13;s:9:"W7S_23295";i:14;s:6:"Operon";i:15;s:7:"1096196";i:16;s:49:"W7S_23290;W7S_23295;W7S_23300;W7S_23305;W7S_23310";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5088625-5088743";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5087600-5088623";i:10;s:1:"-";i:11;s:9:"W7S_23400";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"W7S_23400";i:14;s:6:"Operon";i:15;s:7:"1096202";i:16;s:45:"W7S_23385;W7S_23390(thiG);W7S_23395;W7S_23400";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017904.1";i:2;s:26:"Mycobacterium sp. MOTT36Y ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5464941-5465113";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5464475-5464634";i:10;s:1:"-";i:11;s:9:"W7S_25175";i:12;s:0:"";i:13;s:9:"W7S_25175";i:14;s:6:"Operon";i:15;s:7:"1096286";i:16;s:19:"W7S_25170;W7S_25175";i:17;s:0:"";i:18;s:15:"View Structure ";}}
