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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
473400-473512
(-)
SAM
471824-473150 (-)
Solca_0377
OAH/OAS sulfhydrylase
Solca_0377
Operon
DOOR ID:
1089308
Solca_0376,
Solca_0377
View Structure
2
745008-745216
(+)
cobalamin
745327-746401 (+)
Solca_0615
Solca_0615
Operon
DOOR ID:
1089360
Solca_0615,
Solca_0616,
Solca_0617,
Solca_0618,
Solca_0619,
Solca_0620
View Structure
3
1696808-1697023
(+)
cobalamin
1697132-1699061 (+)
Solca_1414
Outer membrane cobalamin receptor protein
Solca_1414
Single gene
DOOR ID:
3782784
Solca_1414
View Structure
4
2481995-2482143
(-)
cobalamin
2481312-2481831 (-)
Solca_2110
Solca_2110
Operon
DOOR ID:
1089694
Solca_2108,
Solca_2109,
Solca_2110
View Structure
5
2648823-2648937
(+)
SAM
2649097-2650339 (+)
Solca_2248
Homoserine dehydrogenase (HDH)
Solca_2248
Operon
DOOR ID:
1089722
Solca_2248,
Solca_2249
View Structure
6
2691553-2691664
(-)
SAM
2690264-2691437 (-)
Solca_2285
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Solca_2285
Operon
DOOR ID:
1089732
Solca_2284,
Solca_2285
View Structure
7
3779947-3780049
(+)
SAM
3780282-3783978 (+)
Solca_3209
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Solca_3209
Operon
DOOR ID:
1089931
Solca_3209,
Solca_3210
View Structure
8
4164325-4164541
(+)
TPP
4164594-4167054 (+)
Solca_3533
Outer membrane receptor protein
Solca_3533
Operon
DOOR ID:
1090005
Solca_3533,
Solca_3534,
Solca_3535
View Structure
9
4455992-4456084
(-)
TPP
4455126-4455936 (-)
Solca_3813
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Solca_3813
Operon
DOOR ID:
1090059
Solca_3811,
Solca_3812,
Solca_3813
View Structure
10
4522334-4522435
(-)
TPP
4522046-4522262 (-)
Solca_3874
Thiamine biosynthesis protein ThiS
Solca_3874
Operon
DOOR ID:
1090074
Solca_3869,
Solca_3870,
Solca_3871,
Solca_3872,
Solca_3873,
Solca_3874
View Structure
Genome:
Solitalea canadensis DSM 3403
(
NC_017770.1
);
Phylum:
Bacteroidetes/Chlorobi group
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methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017770.1";i:2;s:30:"Solitalea canadensis DSM 3403 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2691553-2691664";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2690264-2691437";i:10;s:1:"-";i:11;s:10:"Solca_2285";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:10:"Solca_2285";i:14;s:6:"Operon";i:15;s:7:"1089732";i:16;s:21:"Solca_2284;Solca_2285";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017770.1";i:2;s:30:"Solitalea canadensis DSM 3403 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"3779947-3780049";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3780282-3783978";i:10;s:1:"+";i:11;s:10:"Solca_3209";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:10:"Solca_3209";i:14;s:6:"Operon";i:15;s:7:"1089931";i:16;s:21:"Solca_3209;Solca_3210";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017770.1";i:2;s:30:"Solitalea canadensis DSM 3403 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4164325-4164541";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4164594-4167054";i:10;s:1:"+";i:11;s:10:"Solca_3533";i:12;s:31:"Outer membrane receptor protein";i:13;s:10:"Solca_3533";i:14;s:6:"Operon";i:15;s:7:"1090005";i:16;s:32:"Solca_3533;Solca_3534;Solca_3535";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017770.1";i:2;s:30:"Solitalea canadensis DSM 3403 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4455992-4456084";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4455126-4455936";i:10;s:1:"-";i:11;s:10:"Solca_3813";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Solca_3813";i:14;s:6:"Operon";i:15;s:7:"1090059";i:16;s:32:"Solca_3811;Solca_3812;Solca_3813";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017770.1";i:2;s:30:"Solitalea canadensis DSM 3403 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4522334-4522435";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4522046-4522262";i:10;s:1:"-";i:11;s:10:"Solca_3874";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"Solca_3874";i:14;s:6:"Operon";i:15;s:7:"1090074";i:16;s:65:"Solca_3869;Solca_3870;Solca_3871;Solca_3872;Solca_3873;Solca_3874";i:17;s:0:"";i:18;s:15:"View Structure ";}}
