Genome: Escherichia coli 042 (NC_017626.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 82417-82516 (-)TPP81402-82386 (-)thiB

Thiamine ABC transport system; substrate-binding protein

DOOR ID: 1272596
EC042_0071 (thiB),
EC042_0070 (thiP),
EC042_0069 (thiQ)
View Structure
2 927466-927610 (+)MOCO928608-929121 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 1272759
EC042_0864 (moaA),
EC042_0865 (moaB),
EC042_0867 (moaC),
EC042_0868 (moaD),
EC042_0869 (moaE)
View Structure
3 2077479-2077580 (+)yybP-ykoY2077710-2078277 (+)EC042_1986

Probable manganese efflux pump MntP
EC042_1986Single gene

DOOR ID: 3725169
EC042_1986 View Structure
4 2446541-2446637 (-)TPP2445717-2446506 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 1273030
EC042_2335 (thiD),
EC042_2336 (thiM)
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5 3562206-3562354 (-)FMN3561448-3562102 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EC042_3339Single gene

DOOR ID: 3725611
EC042_3339 (ribB) View Structure
6 3872707-3872801 (-)SAH3871684-3872245 (-)nudE

ADP compounds hydrolase
EC042_3658Single gene

DOOR ID: 3725701
EC042_3658 (nudE) View Structure
7 4638028-4638218 (+)cobalamin4638240-4640127 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 1273426
EC042_4341 (btuB),
EC042_4342 (murI)
View Structure
8 4670453-4670553 (-)TPP4668476-4670372 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 1273432
EC042_4359 (thiF),
EC042_4360 (thiE),
EC042_4361 (thiC)
View Structure
9 4713402-4713598 (-)lysine4711960-4713310 (-)lysC

EC042_4393Single gene

DOOR ID: 3725970
EC042_4393 (lysC) View Structure
10 4962787-4962833 (+)mini-ykkC4962850-4963168 (+)sugE

EC042_4624Single gene

DOOR ID: 3726057
EC042_4624 (sugE) View Structure
11 5057739-5057854 (+)Mg sensor5057947-5060644 (+)mgtA

Mg(2+) transport ATPase; P-type
EC042_4720Single gene

DOOR ID: 3726098
EC042_4720 (mgtA) View Structure