About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
430166-430299
(+)
MOCO
431363-431840 (+)
Sbal117_0388
Sbal117_0388
Operon
DOOR ID:
1269888
Sbal117_0388,
Sbal117_0387
View Structure
2
804023-804197
(+)
lysine
804347-805703 (+)
Sbal117_0712
Sbal117_0712
Operon
DOOR ID:
1269936
Sbal117_0713,
Sbal117_0712
View Structure
3
897397-897631
(+)
cobalamin
897739-899698 (+)
Sbal117_0803
Sbal117_0803
Single gene
DOOR ID:
3705949
Sbal117_0803
View Structure
4
1124639-1124742
(-)
yybP-ykoY
1124000-1124555 (-)
Sbal117_0991
Sbal117_0991
Single gene
DOOR ID:
3706059
Sbal117_0991
View Structure
5
1124968-1125067
(+)
c-di-GMP-I
1125189-1126635 (+)
Sbal117_0992
Sbal117_0992
single gene
DOOR ID:
3706060
Sbal117_0992
View Structure
6
2198550-2198675
(+)
TPP
2198729-2200961 (+)
Sbal117_1919
Sbal117_1919
Single gene
DOOR ID:
3706536
Sbal117_1919
View Structure
7
3260345-3260385
(-)
SAM-SAH
3259102-3260068 (-)
Sbal117_2828
Sbal117_2828
Single gene
DOOR ID:
3706934
Sbal117_2828
View Structure
8
3423329-3423377
(-)
mini-ykkC
3422998-3423313 (-)
Sbal117_2965
Sbal117_2965
Single gene
DOOR ID:
3706999
Sbal117_2965
View Structure
9
3452120-3452316
(-)
lysine
3450471-3452031 (-)
Sbal117_2986
Sbal117_2986
Single gene
DOOR ID:
3707012
Sbal117_2986
View Structure
10
3702435-3702523
(-)
c-di-GMP-I
3699716-3702320 (-)
Sbal117_3223
Sbal117_3223
single gene
DOOR ID:
3707094
Sbal117_3223
View Structure
11
4027622-4027787
(-)
cobalamin
4026628-4027522 (-)
Sbal117_3505
Sbal117_3505
Operon
DOOR ID:
1270424
Sbal117_3504,
Sbal117_3505
View Structure
12
4206824-4206954
(-)
glycine
4205215-4206574 (-)
Sbal117_3648
Sbal117_3648
Single gene
DOOR ID:
3707314
Sbal117_3648
View Structure
13
5060691-5060920
(+)
FMN
5061111-5061765 (+)
Sbal117_4388
Sbal117_4388
Single gene
DOOR ID:
3707609
Sbal117_4388
View Structure
Genome:
Shewanella baltica OS117
(
NC_017579.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"430166-430299";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"431363-431840";i:10;s:1:"+";i:11;s:12:"Sbal117_0388";i:12;s:0:"";i:13;s:12:"Sbal117_0388";i:14;s:6:"Operon";i:15;s:7:"1269888";i:16;s:25:"Sbal117_0388;Sbal117_0387";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"804023-804197";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"804347-805703";i:10;s:1:"+";i:11;s:12:"Sbal117_0712";i:12;s:0:"";i:13;s:12:"Sbal117_0712";i:14;s:6:"Operon";i:15;s:7:"1269936";i:16;s:25:"Sbal117_0713;Sbal117_0712";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"897397-897631";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"897739-899698";i:10;s:1:"+";i:11;s:12:"Sbal117_0803";i:12;s:0:"";i:13;s:12:"Sbal117_0803";i:14;s:11:"Single gene";i:15;s:7:"3705949";i:16;s:12:"Sbal117_0803";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1124639-1124742";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1124000-1124555";i:10;s:1:"-";i:11;s:12:"Sbal117_0991";i:12;s:0:"";i:13;s:12:"Sbal117_0991";i:14;s:11:"Single gene";i:15;s:7:"3706059";i:16;s:12:"Sbal117_0991";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1124968-1125067";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1125189-1126635";i:10;s:1:"+";i:11;s:12:"Sbal117_0992";i:12;s:0:"";i:13;s:12:"Sbal117_0992";i:14;s:11:"single gene";i:15;s:7:"3706060";i:16;s:12:"Sbal117_0992";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2198550-2198675";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2198729-2200961";i:10;s:1:"+";i:11;s:12:"Sbal117_1919";i:12;s:0:"";i:13;s:12:"Sbal117_1919";i:14;s:11:"Single gene";i:15;s:7:"3706536";i:16;s:12:"Sbal117_1919";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3260345-3260385";i:6;s:1:"-";i:7;s:7:"SAM-SAH";i:8;s:0:"";i:9;s:15:"3259102-3260068";i:10;s:1:"-";i:11;s:12:"Sbal117_2828";i:12;s:0:"";i:13;s:12:"Sbal117_2828";i:14;s:11:"Single gene";i:15;s:7:"3706934";i:16;s:12:"Sbal117_2828";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3423329-3423377";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3422998-3423313";i:10;s:1:"-";i:11;s:12:"Sbal117_2965";i:12;s:0:"";i:13;s:12:"Sbal117_2965";i:14;s:11:"Single gene";i:15;s:7:"3706999";i:16;s:12:"Sbal117_2965";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3452120-3452316";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3450471-3452031";i:10;s:1:"-";i:11;s:12:"Sbal117_2986";i:12;s:0:"";i:13;s:12:"Sbal117_2986";i:14;s:11:"Single gene";i:15;s:7:"3707012";i:16;s:12:"Sbal117_2986";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3702435-3702523";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3699716-3702320";i:10;s:1:"-";i:11;s:12:"Sbal117_3223";i:12;s:0:"";i:13;s:12:"Sbal117_3223";i:14;s:11:"single gene";i:15;s:7:"3707094";i:16;s:12:"Sbal117_3223";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4027622-4027787";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4026628-4027522";i:10;s:1:"-";i:11;s:12:"Sbal117_3505";i:12;s:0:"";i:13;s:12:"Sbal117_3505";i:14;s:6:"Operon";i:15;s:7:"1270424";i:16;s:25:"Sbal117_3504;Sbal117_3505";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4206824-4206954";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4205215-4206574";i:10;s:1:"-";i:11;s:12:"Sbal117_3648";i:12;s:0:"";i:13;s:12:"Sbal117_3648";i:14;s:11:"Single gene";i:15;s:7:"3707314";i:16;s:12:"Sbal117_3648";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017579.1";i:2;s:25:"Shewanella baltica OS117 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5060691-5060920";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5061111-5061765";i:10;s:1:"+";i:11;s:12:"Sbal117_4388";i:12;s:0:"";i:13;s:12:"Sbal117_4388";i:14;s:11:"Single gene";i:15;s:7:"3707609";i:16;s:12:"Sbal117_4388";i:17;s:0:"";i:18;s:15:"View Structure ";}}
