RiboswitchDB

Genome: Brucella melitensis NI chromosome II (NC_017283.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

295722-295935 (+)

cobalamin

296205-296508 (+)

BMNI_II0300

Operon

DOOR ID: 1347248

BMNI_II0303,
BMNI_II0302,
BMNI_II0301,
BMNI_II0300

2

644943-645106 (+)

FMN

645182-645659 (+)

BMNI_II0645

Single gene

DOOR ID: 3567148

BMNI_II0645

3

684181-684265 (-)

glycine

682929-684033 (-)

BMNI_II0676

Operon

DOOR ID: 1347321

BMNI_II0676,
BMNI_II0675,
BMNI_II0674

4

708695-708927 (-)

cobalamin

707460-708495 (-)

BMNI_II0700

Operon

DOOR ID: 1347326

BMNI_II0700,
BMNI_II0699,
BMNI_II0698

a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017283.1";i:2;s:36:"Brucella melitensis NI chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"295722-295935";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"296205-296508";i:10;s:1:"+";i:11;s:11:"BMNI_II0300";i:12;s:0:"";i:13;s:11:"BMNI_II0300";i:14;s:6:"Operon";i:15;s:7:"1347248";i:16;s:47:"BMNI_II0303;BMNI_II0302;BMNI_II0301;BMNI_II0300";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017283.1";i:2;s:36:"Brucella melitensis NI chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"644943-645106";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"645182-645659";i:10;s:1:"+";i:11;s:11:"BMNI_II0645";i:12;s:0:"";i:13;s:11:"BMNI_II0645";i:14;s:11:"Single gene";i:15;s:7:"3567148";i:16;s:11:"BMNI_II0645";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017283.1";i:2;s:36:"Brucella melitensis NI chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"684181-684265";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"682929-684033";i:10;s:1:"-";i:11;s:11:"BMNI_II0676";i:12;s:0:"";i:13;s:11:"BMNI_II0676";i:14;s:6:"Operon";i:15;s:7:"1347321";i:16;s:35:"BMNI_II0676;BMNI_II0675;BMNI_II0674";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017283.1";i:2;s:36:"Brucella melitensis NI chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"708695-708927";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"707460-708495";i:10;s:1:"-";i:11;s:11:"BMNI_II0700";i:12;s:0:"";i:13;s:11:"BMNI_II0700";i:14;s:6:"Operon";i:15;s:7:"1347326";i:16;s:35:"BMNI_II0700;BMNI_II0699;BMNI_II0698";i:17;s:0:"";i:18;s:15:"View Structure
";}}