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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
186711-186789
(-)
sam-alpha
185482-186667 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
SFHH103_00177
Single gene
DOOR ID:
3392228
SFHH103_00177
(metZ)
View Structure
2
1551786-1551873
(-)
glycine
1550504-1551668 (-)
gcvt3
Glycine cleavage system protein T2
SFHH103_01443
Single gene
DOOR ID:
3392814
SFHH103_01443
(gcvt3)
View Structure
3
1704444-1704656
(-)
cobalamin
1703692-1704400 (-)
SFHH103_01574
Nitroreductase family protein
SFHH103_01574
Single gene
DOOR ID:
3392892
SFHH103_01574
View Structure
4
1790810-1790919
(-)
glycine
1788646-1789351 (-)
SFHH103_01652
SFHH103_01652
Operon
DOOR ID:
1215051
SFHH103_01651,
SFHH103_01652,
SFHH103_01653,
SFHH103_01654,
SFHH103_01655,
SFHH103_01656,
SFHH103_01657,
SFHH103_01658,
SFHH103_01659,
SFHH103_01660
View Structure
5
1827172-1827250
(+)
SAH
1827543-1828572 (-)
SFHH103_01706
Voltage-gated potassium channel subunit beta-1 K(+) channel subunit beta-1 Kv-beta-1
SFHH103_01706
Single gene
DOOR ID:
3392948
SFHH103_01706
View Structure
6
1877078-1877474
(-)
cobalamin
1875349-1876414 (-)
cobW
Protein cobW
SFHH103_01749
Operon
DOOR ID:
1215067
SFHH103_01749
(cobW)
,
SFHH103_01750
(cobU)
View Structure
7
2199271-2199422
(+)
FMN
2199512-2199986 (+)
ribh3
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
SFHH103_02050
Single gene
DOOR ID:
3393124
SFHH103_02050
(ribh3)
View Structure
8
2243772-2244043
(+)
cobalamin
2244082-2244259 (+)
SFHH103_02087
Probable cobalt transporter subunit CbtB
SFHH103_02087
Single gene
DOOR ID:
3393143
SFHH103_02087
View Structure
9
2412102-2412156
(+)
glutamine
2412795-2414094 (-)
SFHH103_02249
Putative transport protein
SFHH103_02249
Single gene
DOOR ID:
3393240
SFHH103_02249
View Structure
10
2660848-2661051
(-)
cobalamin
2659475-2660723 (-)
SFHH103_02484
Rieske 2Fe-2S family protein (0)
SFHH103_02484
Operon
DOOR ID:
1215195
SFHH103_02481
(fdhA)
,
SFHH103_02482,
SFHH103_02483,
SFHH103_02484
View Structure
11
3451840-3451917
(+)
sam-alpha
3451978-3452902 (+)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
SFHH103_03191
Single gene
DOOR ID:
3393631
SFHH103_03191
(metA)
View Structure
12
3542312-3542426
(+)
TPP
3542475-3543504 (+)
thiB
ThiB protein
SFHH103_03279
Operon
DOOR ID:
1215360
SFHH103_03279
(thiB)
,
SFHH103_03280
(thiP)
,
SFHH103_03281
(thiQ)
View Structure
Genome:
Sinorhizobium fredii HH103
(
NC_016812.1
);
Phylum:
Alphaproteobacteria
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[GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1551786-1551873";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1550504-1551668";i:10;s:1:"-";i:11;s:5:"gcvt3";i:12;s:34:"Glycine cleavage system protein T2";i:13;s:13:"SFHH103_01443";i:14;s:11:"Single gene";i:15;s:7:"3392814";i:16;s:20:"SFHH103_01443(gcvt3)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1704444-1704656";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1703692-1704400";i:10;s:1:"-";i:11;s:13:"SFHH103_01574";i:12;s:30:"Nitroreductase family protein ";i:13;s:13:"SFHH103_01574";i:14;s:11:"Single gene";i:15;s:7:"3392892";i:16;s:13:"SFHH103_01574";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1790810-1790919";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1788646-1789351";i:10;s:1:"-";i:11;s:13:"SFHH103_01652";i:12;s:0:"";i:13;s:13:"SFHH103_01652";i:14;s:6:"Operon";i:15;s:7:"1215051";i:16;s:139:"SFHH103_01651;SFHH103_01652;SFHH103_01653;SFHH103_01654;SFHH103_01655;SFHH103_01656;SFHH103_01657;SFHH103_01658;SFHH103_01659;SFHH103_01660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1827172-1827250";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1827543-1828572";i:10;s:1:"-";i:11;s:13:"SFHH103_01706";i:12;s:84:"Voltage-gated potassium channel subunit beta-1 K(+) channel subunit beta-1 Kv-beta-1";i:13;s:13:"SFHH103_01706";i:14;s:11:"Single gene";i:15;s:7:"3392948";i:16;s:13:"SFHH103_01706";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1877078-1877474";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1875349-1876414";i:10;s:1:"-";i:11;s:4:"cobW";i:12;s:12:"Protein cobW";i:13;s:13:"SFHH103_01749";i:14;s:6:"Operon";i:15;s:7:"1215067";i:16;s:39:"SFHH103_01749(cobW);SFHH103_01750(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2199271-2199422";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2199512-2199986";i:10;s:1:"+";i:11;s:5:"ribh3";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:13:"SFHH103_02050";i:14;s:11:"Single gene";i:15;s:7:"3393124";i:16;s:20:"SFHH103_02050(ribh3)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2243772-2244043";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2244082-2244259";i:10;s:1:"+";i:11;s:13:"SFHH103_02087";i:12;s:40:"Probable cobalt transporter subunit CbtB";i:13;s:13:"SFHH103_02087";i:14;s:11:"Single gene";i:15;s:7:"3393143";i:16;s:13:"SFHH103_02087";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2412102-2412156";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2412795-2414094";i:10;s:1:"-";i:11;s:13:"SFHH103_02249";i:12;s:26:"Putative transport protein";i:13;s:13:"SFHH103_02249";i:14;s:11:"Single gene";i:15;s:7:"3393240";i:16;s:13:"SFHH103_02249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2660848-2661051";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2659475-2660723";i:10;s:1:"-";i:11;s:13:"SFHH103_02484";i:12;s:32:"Rieske 2Fe-2S family protein (0)";i:13;s:13:"SFHH103_02484";i:14;s:6:"Operon";i:15;s:7:"1215195";i:16;s:61:"SFHH103_02481(fdhA);SFHH103_02482;SFHH103_02483;SFHH103_02484";i:17;s:39:"cellular metabolic process [GO:0044237]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3451840-3451917";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3451978-3452902";i:10;s:1:"+";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:13:"SFHH103_03191";i:14;s:11:"Single gene";i:15;s:7:"3393631";i:16;s:19:"SFHH103_03191(metA)";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016812.1";i:2;s:26:"Sinorhizobium fredii HH103";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3542312-3542426";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3542475-3543504";i:10;s:1:"+";i:11;s:4:"thiB";i:12;s:12:"ThiB protein";i:13;s:13:"SFHH103_03279";i:14;s:6:"Operon";i:15;s:7:"1215360";i:16;s:59:"SFHH103_03279(thiB);SFHH103_03280(thiP);SFHH103_03281(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
