RiboswitchDB

Genome: Corynebacterium diphtheriae HC03 (NC_016787.1); Phylum: Actinobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

30298-30408 (+)

TPP

30408-32208 (+)

thiC

Operon

DOOR ID: 960697

CDHC03_0029 (thiC),
CDHC03_0030 (thiE),
CDHC03_0031 (thiO)

2

825068-825268 (+)

cobalamin

825761-827192 (-)

gapB

Single gene

DOOR ID: 3375592

CDHC03_0799 (gapB)

3

885693-885824 (+)

TPP

886420-887596 (-)

CDHC03_0856

Single gene

DOOR ID: 3375621

CDHC03_0856

4

887633-887745 (+)

TPP

889115-889871 (+)

CDHC03_0858

Operon

DOOR ID: 960879

CDHC03_0857,
CDHC03_0858,
CDHC03_0859

5

1028825-1029026 (+)

cobalamin

1029078-1030119 (+)

CDHC03_0989

Operon

DOOR ID: 960910

CDHC03_0988,
CDHC03_0989,
CDHC03_0990,
CDHC03_0991

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016787.1";i:2;s:33:"Corynebacterium diphtheriae HC03 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"30298-30408";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"30408-32208";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:11:"CDHC03_0029";i:14;s:6:"Operon";i:15;s:6:"960697";i:16;s:53:"CDHC03_0029(thiC);CDHC03_0030(thiE);CDHC03_0031(thiO)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016787.1";i:2;s:33:"Corynebacterium diphtheriae HC03 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"825068-825268";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"825761-827192";i:10;s:1:"-";i:11;s:4:"gapB";i:12;s:0:"";i:13;s:11:"CDHC03_0799";i:14;s:11:"Single gene";i:15;s:7:"3375592";i:16;s:17:"CDHC03_0799(gapB)";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016787.1";i:2;s:33:"Corynebacterium diphtheriae HC03 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"885693-885824";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"886420-887596";i:10;s:1:"-";i:11;s:11:"CDHC03_0856";i:12;s:0:"";i:13;s:11:"CDHC03_0856";i:14;s:11:"Single gene";i:15;s:7:"3375621";i:16;s:11:"CDHC03_0856";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016787.1";i:2;s:33:"Corynebacterium diphtheriae HC03 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"887633-887745";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"889115-889871";i:10;s:1:"+";i:11;s:11:"CDHC03_0858";i:12;s:0:"";i:13;s:11:"CDHC03_0858";i:14;s:6:"Operon";i:15;s:6:"960879";i:16;s:35:"CDHC03_0857;CDHC03_0858;CDHC03_0859";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016787.1";i:2;s:33:"Corynebacterium diphtheriae HC03 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1028825-1029026";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1029078-1030119";i:10;s:1:"+";i:11;s:11:"CDHC03_0989";i:12;s:0:"";i:13;s:11:"CDHC03_0989";i:14;s:6:"Operon";i:15;s:6:"960910";i:16;s:47:"CDHC03_0988;CDHC03_0989;CDHC03_0990;CDHC03_0991";i:17;s:0:"";i:18;s:15:"View Structure
";}}