Genome: Listeria ivanovii subsp. ivanovii PAM 55 (NC_016011.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 126531-126633 (+)SAM126719-128353 (+)LIV_0117

Putative oligopeptide ABC transport system substrate-binding protein		LIV_0117Single gene

DOOR ID: 3276700		LIV_0117 View Structure
2 300755-300872 (-)SAM299823-300645 (-)LIV_0262

Lipoprotein		LIV_0262Operon

DOOR ID: 923798		LIV_0260,
LIV_0261,
LIV_0262		 View Structure
3 541896-541997 (-)purine540471-541804 (-)LIV_0501

LIV_0501Single gene

DOOR ID: 3276854		LIV_0501 View Structure
4 571257-571357 (-)SAM569871-571149 (-)LIV_0525

Putative O-acetylhomoserine sulfhydrylase		LIV_0525Operon

DOOR ID: 923846		LIV_0524,
LIV_0525		 View Structure
5 714344-714539 (+)glmS714622-716461 (+)LIV_0669

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		LIV_0669Single gene

DOOR ID: 3276914		LIV_0669 View Structure
6 778745-778942 (-)lysine777146-778653 (-)LIV_0731

Putative lysine-specific permease		LIV_0731Single gene

DOOR ID: 3276947		LIV_0731 View Structure
7 838584-838681 (+)SAM838775-839917 (+)LIV_0781

LIV_0781Single gene

DOOR ID: 3276973		LIV_0781 View Structure
8 872376-872423 (+)PreQ1872428-872947 (+)LIV_0808

LIV_0808Single gene

DOOR ID: 3276984		LIV_0808 View Structure
9 990015-990119 (+)yybP-ykoY990218-990986 (+)LIV_0936

LIV_0936Single gene

DOOR ID: 3277020		LIV_0936 View Structure
10 1135604-1135795 (+)cobalamin1137126-1137414 (+)LIV_1083

Putative propanediol utilization protein PduA		LIV_1083Operon

DOOR ID: 923948		LIV_1083,
LIV_1084,
LIV_1085,
LIV_1086,
LIV_1087,
LIV_1088,
LIV_1089,
LIV_1090,
LIV_1091,
LIV_1092,
LIV_1093,
LIV_1094,
LIV_1095,
LIV_1096,
LIV_1097,
LIV_1098,
LIV_1099 (glpF),
LIV_1100 (AckA2),
LIV_1101 (cobD),
LIV_1102		 View Structure
11 1153880-1154011 (+)cobalamin1154421-1155574 (+)LIV_1103

Putative NADPH-dependent butanol dehydrogenase		LIV_1103Single gene

DOOR ID: 3277072		LIV_1103 View Structure
12 1170576-1170773 (+)cobalamin1170931-1172290 (+)cbiA

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		LIV_1122Operon

DOOR ID: 923952		LIV_1122 (cbiA),
LIV_1123,
LIV_1124,
LIV_1125 (cbiD),
LIV_1126 (cbiE),
LIV_1127,
LIV_1128 (cbiF),
LIV_1129 (cbiG),
LIV_1130 (cbiH),
LIV_1131,
LIV_1132,
LIV_1133 (cbiK),
LIV_1134 (cbiL),
LIV_1135,
LIV_1136,
LIV_1137 (cbiQ),
LIV_1138,
LIV_1139 (cbiP),
LIV_1140		 View Structure
13 1352606-1352697 (+)glycine1352782-1353871 (+)LIV_1299

Aminomethyltransferase (0) (Glycine cleavage system T protein)		LIV_1299Operon

DOOR ID: 923985		LIV_1299,
LIV_1300,
LIV_1301		 View Structure
14 1451707-1451817 (-)TPP1451044-1451637 (-)LIV_1388

LIV_1388Single gene

DOOR ID: 3277170		LIV_1388 View Structure
15 1726899-1727007 (-)SAM1725557-1726806 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		LIV_1640Single gene

DOOR ID: 3277241		LIV_1640 (metK) View Structure
16 1744693-1744799 (-)SAM1742288-1744600 (-)LIV_1656

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		LIV_1656Operon

DOOR ID: 924067		LIV_1653,
LIV_1654,
LIV_1655,
LIV_1656		 View Structure
17 1968657-1968757 (-)purine1967995-1968574 (-)LIV_1862

Xanthine phosphoribosyltransferase (XPRTase) (2)		LIV_1862Operon

DOOR ID: 924108		LIV_1861,
LIV_1862		 View Structure
18 2033437-2033559 (-)FMN2032597-2033247 (-)LIV_1925

Riboflavin transporter		LIV_1925Single gene

DOOR ID: 3277324		LIV_1925 View Structure
19 2467274-2467392 (-)SAM2466160-2467183 (-)LIV_2325

Methionine import ATP-binding protein MetN 		LIV_2325Operon

DOOR ID: 924206		LIV_2323,
LIV_2324,
LIV_2325		 View Structure