Genome: Paenibacillus mucilaginosus KNP414 (NC_015690.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 30540-30627 (+)c-di-GMP-I30738-31449 (+)KNP414_00032

Uncharacterized protein		KNP414_00032single gene

DOOR ID: 3198196		KNP414_00032 View Structure
2 39280-39360 (+)ZMP-ZTP39459-39918 (+)ywlF

YwlF		KNP414_00041Operon

DOOR ID: 884724		KNP414_00041 (ywlF),
KNP414_00042		 View Structure
3 472797-472880 (+)c-di-GMP-II472894-473053 (+)KNP414_00455

KNP414_00455Single gene

DOOR ID: 3198354		KNP414_00455 View Structure
4 483052-483165 (+)TPP483354-485178 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		KNP414_00466Single gene

DOOR ID: 3198362		KNP414_00466 (thiC) View Structure
5 618092-618192 (+)purine618447-619860 (+)KNP414_00601

Xanthine/uracil/vitamin C permease		KNP414_00601Single gene

DOOR ID: 3198427		KNP414_00601 View Structure
6 864017-864121 (-)ykkC-yxkD862565-863933 (-)KNP414_00843

Amino acid permease-associated region		KNP414_00843Single gene

DOOR ID: 3198538		KNP414_00843 View Structure
7 864286-864392 (+)ykkC-yxkD864457-865174 (+)KNP414_00844

Urea carboxylase-associated protein 2		KNP414_00844Operon

DOOR ID: 884870		KNP414_00844,
KNP414_00845,
KNP414_00846,
KNP414_00847		 View Structure
8 980457-980542 (+)c-di-GMP-I980650-981775 (+)KNP414_00939

Beta-xylanase		KNP414_00939single gene

DOOR ID: 3198581		KNP414_00939 View Structure
9 1067997-1068137 (+)TPP1068235-1068436 (+)KNP414_01036

Thiamine biosynthesis protein ThiS		KNP414_01036Operon

DOOR ID: 884904		KNP414_01036,
KNP414_01037 (thiG)		 View Structure
10 1086417-1086516 (-)purine1085010-1086348 (-)KNP414_01076

N-ethylammeline chlorohydrolase		KNP414_01076Single gene

DOOR ID: 3198622		KNP414_01076 View Structure
11 1464270-1464434 (-)ydaO-yuaA1462288-1464115 (-)ydaO

YdaO		KNP414_01449Single gene

DOOR ID: 3198798		KNP414_01449 (ydaO) View Structure
12 2325827-2325919 (-)c-di-GMP-I2324279-2325758 (-)KNP414_02186

Diguanylate cyclase		KNP414_02186single gene

DOOR ID: 3199130		KNP414_02186 View Structure
13 2383163-2383303 (+)ydaO-yuaA2383463-2383790 (+)KNP414_02238

KNP414_02238Single gene

DOOR ID: 3199151		KNP414_02238 View Structure
14 2510780-2510859 (+)ZMP-ZTP2510920-2511769 (+)folD

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		KNP414_02364Single gene

DOOR ID: 3199213		KNP414_02364 (folD) View Structure
15 2741749-2741848 (-)purine2740365-2741658 (-)pbuO

PbuO		KNP414_02586Single gene

DOOR ID: 3199307		KNP414_02586 (pbuO) View Structure
16 2858026-2858198 (+)FMN2858486-2859707 (+)KNP414_02724

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		KNP414_02724Operon

DOOR ID: 885239		KNP414_02724,
KNP414_02725 (ribE)		 View Structure
17 2865292-2865388 (+)c-di-GMP-I2865533-2867999 (+)KNP414_02732

Probable signaling protein YkoW		KNP414_02732single gene

DOOR ID: 3199362		KNP414_02732 View Structure
18 3205243-3205331 (+)c-di-GMP-I3205415-3205757 (+)KNP414_03034

Uncharacterized protein		KNP414_03034operon

DOOR ID: 885307		KNP414_03034,
KNP414_03035		 View Structure
19 3407173-3407329 (-)FMN3406060-3407041 (-)KNP414_03259

KNP414_03259Single gene

DOOR ID: 3199542		KNP414_03259 View Structure
20 3586641-3586781 (-)SAM3585410-3586430 (-)metN

Methionine import ATP-binding protein MetN 		KNP414_03449Operon

DOOR ID: 885389		KNP414_03448,
KNP414_03449 (metN)		 View Structure
21 3720020-3720215 (-)cobalamin3719105-3719915 (-)KNP414_03582

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		KNP414_03582Operon

DOOR ID: 885418		KNP414_03579,
KNP414_03580,
KNP414_03581,
KNP414_03582		 View Structure
22 3792752-3792850 (-)purine3791262-3792699 (-)KNP414_03668

KNP414_03668Single gene

DOOR ID: 3199730		KNP414_03668 View Structure
23 3876019-3876163 (+)ydaO-yuaA3876237-3877590 (+)KNP414_03753

Potassium uptake protein; TrkH family		KNP414_03753Operon

DOOR ID: 885459		KNP414_03753,
KNP414_03754,
KNP414_03755		 View Structure
24 4924207-4924295 (-)yybP-ykoY4923321-4924098 (-)ykoY

YkoY		KNP414_04571Single gene

DOOR ID: 3200164		KNP414_04571 (ykoY) View Structure
25 5872444-5872593 (-)ydaO-yuaA5872158-5872326 (-)KNP414_05280

KNP414_05280Single gene

DOOR ID: 3200441		KNP414_05280 View Structure
26 6097648-6097735 (+)c-di-GMP-I6097868-6098006 (+)KNP414_05511

Uncharacterized protein		KNP414_05511operon

DOOR ID: 885787		KNP414_05511,
KNP414_05512		 View Structure
27 6120416-6120499 (+)c-di-GMP-II6120551-6120719 (+)KNP414_05530

KNP414_05530Single gene

DOOR ID: 3200571		KNP414_05530 View Structure
28 6781384-6781484 (-)TPP6779882-6781238 (-)ylmB

YlmB		KNP414_06161Operon

DOOR ID: 885918		KNP414_06160,
KNP414_06161 (ylmB)		 View Structure
29 6843561-6843699 (-)ydaO-yuaA6842665-6843490 (-)KNP414_06218

Cell wall lytic activity		KNP414_06218Single gene

DOOR ID: 3200865		KNP414_06218 View Structure
30 7240659-7240764 (-)TPP7239913-7240600 (-)KNP414_06567

KNP414_06567Operon

DOOR ID: 886004		KNP414_06565,
KNP414_06566,
KNP414_06567		 View Structure
31 7301554-7301674 (-)ykkC-yxkD7300425-7301424 (-)KNP414_06629

ABC transporter related protein		KNP414_06629Operon

DOOR ID: 886013		KNP414_06627,
KNP414_06628,
KNP414_06629		 View Structure
32 7456184-7456333 (-)SAM7455127-7456054 (-)metA

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		KNP414_06768Operon

DOOR ID: 886039		KNP414_06767 (metB),
KNP414_06768 (metA)		 View Structure
33 7483371-7483596 (-)cobalamin7482161-7483172 (-)KNP414_06797

ABC transporter substrate binding protein		KNP414_06797Operon

DOOR ID: 886045		KNP414_06796,
KNP414_06797		 View Structure
34 7526377-7526588 (-)cobalamin7524197-7526093 (-)KNP414_06835

Precorrin-3 methylase		KNP414_06835Single gene

DOOR ID: 3201138		KNP414_06835 View Structure
35 7538699-7538898 (+)cobalamin7539033-7541259 (+)nrdA

Ribonucleoside-diphosphate reductase 		KNP414_06850Single gene

DOOR ID: 3201152		KNP414_06850 (nrdA) View Structure
36 7702369-7702453 (-)c-di-GMP-I7699514-7702208 (-)KNP414_07003

Diguanylate cyclase/phosphodiesterase		KNP414_07003operon

DOOR ID: 886081		KNP414_07002,
KNP414_07003		 View Structure
37 7922787-7922877 (-)yybP-ykoY7922368-7922662 (-)KNP414_07221

KNP414_07221Operon

DOOR ID: 886127		KNP414_07220,
KNP414_07221		 View Structure
38 8027319-8027421 (-)purine8026650-8027136 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		KNP414_07329Operon

DOOR ID: 886146		KNP414_07326,
KNP414_07327 (purB),
KNP414_07328,
KNP414_07329 (purE)		 View Structure
39 8028427-8028606 (+)ydaO-yuaA8028657-8029500 (+)KNP414_07331

KNP414_07331Single gene

DOOR ID: 3201374		KNP414_07331 View Structure
40 8171722-8172009 (-)glmS8169826-8171656 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		KNP414_07465Single gene

DOOR ID: 3201440		KNP414_07465 (glmS) View Structure
41 8291654-8291683 (-)SAM-SAH8291453-8291630 (+)KNP414_07594

KNP414_07594Single gene

DOOR ID: 3201468		KNP414_07594 View Structure
42 8308801-8309022 (-)ydaO-yuaA8307290-8308343 (-)KNP414_07614

3D domain protein		KNP414_07614Single gene

DOOR ID: 3201480		KNP414_07614 View Structure
43 8357302-8357436 (+)ydaO-yuaA8357548-8357911 (+)KNP414_07668

NLP/P60 family protein		KNP414_07668Single gene

DOOR ID: 3201501		KNP414_07668 View Structure
44 8482045-8482134 (-)c-di-GMP-I8478868-8481610 (-)cph22

Cph22		KNP414_07796single gene

DOOR ID: 3201577		KNP414_07796 (cph22) View Structure
45 8482363-8482460 (-)c-di-GMP-I8482211-8482325 (-)KNP414_07798

Uncharacterized protein		KNP414_07798operon

DOOR ID: 886235		KNP414_07797,
KNP414_07798		 View Structure
46 8527102-8527198 (-)c-di-GMP-I8521694-8527007 (-)KNP414_07832

Fibronectin type III domain protein		KNP414_07832single gene

DOOR ID: 3201594		KNP414_07832 View Structure
47 8607024-8607127 (-)purine8606258-8606855 (-)xpt3

Xanthine phosphoribosyltransferase (XPRTase) (2)		KNP414_07913Operon

DOOR ID: 886258		KNP414_07912,
KNP414_07913 (xpt3)		 View Structure