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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1136051-1136161
(-)
TPP
1134825-1135023 (-)
thiS
Thiamine-biosynthesis protein ThiS
OCA5_c10640
Operon
DOOR ID:
883458
OCA5_c10640
(thiS)
,
OCA5_c10650
(thiO1)
View Structure
2
1421652-1421866
(+)
cobalamin
1421976-1424340 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
OCA5_c13230
Single gene
DOOR ID:
3195636
OCA5_c13230
(metE)
View Structure
3
2549363-2549618
(+)
cobalamin
2549790-2552040 (+)
OCA5_c23710
TonB-dependent receptor protein
OCA5_c23710
Single gene
DOOR ID:
3196064
OCA5_c23710
View Structure
4
2708165-2708278
(+)
glycine
2708411-2709560 (+)
gcvT
Aminomethyltransferase GcvT (0)
OCA5_c25490
Operon
DOOR ID:
883744
OCA5_c25490
(gcvT)
,
OCA5_c25500
(gcvH)
View Structure
5
2715969-2716030
(-)
fluoride
2715350-2715734 (-)
crcB1
Putative fluoride ion transporter CrcB
OCA5_c25540
Single gene
DOOR ID:
3196151
OCA5_c25540
(crcB1)
View Structure
6
3363468-3363547
(-)
sam-alpha
3362190-3363399 (-)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
OCA5_c31770
Operon
DOOR ID:
883852
OCA5_c31760,
OCA5_c31770
(metX)
View Structure
7
3473200-3473279
(+)
sam-alpha
3473352-3474564 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
OCA5_c32870
Single gene
DOOR ID:
3196481
OCA5_c32870
(metZ)
View Structure
Genome:
Oligotropha carboxidovorans OM5
(
NC_015684.1
);
Phylum:
Alphaproteobacteria
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