Genome: Pseudomonas fulva 12-X (NC_015556.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 60049-60253 (-)cobalamin58597-59953 (-)Psefu_0056

Precorrin-3B synthase
Psefu_0056Operon

DOOR ID: 854723
Psefu_0054,
Psefu_0055,
Psefu_0056
View Structure
2 95383-95443 (+)SAH95752-96769 (-)Psefu_0088

ADP-ribosylation/Crystallin J1
Psefu_0088Operon

DOOR ID: 854728
Psefu_0086,
Psefu_0087,
Psefu_0088,
Psefu_0089
View Structure
3 163734-163827 (+)SAH163987-165289 (-)Psefu_0142

Mn2+/Fe2+ transporter
Psefu_0142Single gene

DOOR ID: 3139483
Psefu_0142 View Structure
4 382227-382310 (-)SAH380751-382146 (-)Psefu_0338

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Psefu_0338Operon

DOOR ID: 854778
Psefu_0337,
Psefu_0338
View Structure
5 751345-751501 (+)FMN751593-752055 (+)Psefu_0686

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Psefu_0686Operon

DOOR ID: 854847
Psefu_0686,
Psefu_0687,
Psefu_0688,
Psefu_0689,
Psefu_0690,
Psefu_0691,
Psefu_0692,
Psefu_0693,
Psefu_0694
View Structure
6 1499431-1499520 (+)glycine1499641-1500262 (+)Psefu_1382

Psefu_1382Single gene

DOOR ID: 3139974
Psefu_1382 View Structure
7 1499521-1499620 (+)glycine1499641-1500262 (+)Psefu_1382

Psefu_1382Single gene

DOOR ID: 3139974
Psefu_1382 View Structure
8 2011266-2011495 (+)cobalamin2011619-2012255 (+)Psefu_1874

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
Psefu_1874Operon

DOOR ID: 855082
Psefu_1874,
Psefu_1875,
Psefu_1876,
Psefu_1877,
Psefu_1878,
Psefu_1879,
Psefu_1880,
Psefu_1881,
Psefu_1882,
Psefu_1883
View Structure
9 2372253-2372419 (+)yybP-ykoY2372423-2372987 (+)Psefu_2214

Putative manganese efflux pump MntP
Psefu_2214Single gene

DOOR ID: 3140299
Psefu_2214 View Structure
10 2375885-2376081 (+)cobalamin2376250-2377258 (+)Psefu_2216

Periplasmic binding protein
Psefu_2216Operon

DOOR ID: 855144
Psefu_2216,
Psefu_2217,
Psefu_2218,
Psefu_2219,
Psefu_2220
View Structure
11 3370879-3370925 (+)mini-ykkC3370945-3371263 (+)Psefu_3149

Psefu_3149Single gene

DOOR ID: 3140662
Psefu_3149 View Structure
12 3515726-3515830 (+)ykkC-yxkD3515893-3516961 (+)Psefu_3268

ABC transporter periplasmic binding protein; urea carboxylase region
Psefu_3268Operon

DOOR ID: 855354
Psefu_3268,
Psefu_3269,
Psefu_3270,
Psefu_3271,
Psefu_3272,
Psefu_3273,
Psefu_3274,
Psefu_3275,
Psefu_3276,
Psefu_3277
View Structure
13 3520168-3520215 (+)mini-ykkC3520235-3523910 (+)Psefu_3274

Psefu_3274Operon

DOOR ID: 855354
Psefu_3268,
Psefu_3269,
Psefu_3270,
Psefu_3271,
Psefu_3272,
Psefu_3273,
Psefu_3274,
Psefu_3275,
Psefu_3276,
Psefu_3277
View Structure
14 3647527-3647670 (+)yybP-ykoY3647758-3648349 (+)Psefu_3389

Psefu_3389Single gene

DOOR ID: 3140747
Psefu_3389 View Structure
15 4537639-4537745 (-)TPP4535441-4537328 (-)Psefu_4159

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Psefu_4159Single gene

DOOR ID: 3141009
Psefu_4159 View Structure
16 4679813-4679923 (+)glycine4679927-4680842 (-)Psefu_4289

SdiA-regulated domain protein
Psefu_4289Single gene

DOOR ID: 3141058
Psefu_4289 View Structure
17 4847469-4847652 (-)cobalamin4846321-4847371 (-)Psefu_4438

Cobalamin biosynthesis protein CobW
Psefu_4438Operon

DOOR ID: 855607
Psefu_4436,
Psefu_4437,
Psefu_4438
View Structure
18 4847724-4847926 (+)cobalamin4848020-4848206 (+)Psefu_4439

Cobalt transporter; subunit CbtB
Psefu_4439Operon

DOOR ID: 855608
Psefu_4439,
Psefu_4440,
Psefu_4441
View Structure