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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
6341-6475
(+)
ydaO-yuaA
6491-7406 (+)
Mahau_0006
NLP/P60 protein
Mahau_0006
Single gene
DOOR ID:
3136248
Mahau_0006
View Structure
2
385662-385736
(+)
glycine
385954-387019 (+)
Mahau_0348
L-threonine aldolase
Mahau_0348
Single gene
DOOR ID:
3136339
Mahau_0348
View Structure
3
385745-385820
(+)
glycine
385954-387019 (+)
Mahau_0348
L-threonine aldolase
Mahau_0348
Single gene
DOOR ID:
3136339
Mahau_0348
View Structure
4
708978-709125
(+)
glmS
709238-711059 (+)
Mahau_0669
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Mahau_0669
Single gene
DOOR ID:
3136396
Mahau_0669
View Structure
5
784769-784948
(-)
lysine
783659-784661 (-)
Mahau_0735
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Mahau_0735
Operon
DOOR ID:
853072
Mahau_0733,
Mahau_0734,
Mahau_0735
View Structure
6
800651-800765
(+)
cobalamin
800938-801898 (+)
Mahau_0753
Periplasmic binding protein
Mahau_0753
Operon
DOOR ID:
853076
Mahau_0753,
Mahau_0754,
Mahau_0755,
Mahau_0756,
Mahau_0757,
Mahau_0758,
Mahau_0759
View Structure
7
1114539-1114719
(-)
cobalamin
1113397-1114450 (-)
Mahau_1080
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Mahau_1080
Single gene
DOOR ID:
3136468
Mahau_1080
View Structure
8
1281142-1281321
(+)
cobalamin
1281439-1282816 (+)
Mahau_1224
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
Mahau_1224
Operon
DOOR ID:
853166
Mahau_1224,
Mahau_1225,
Mahau_1226,
Mahau_1227,
Mahau_1228,
Mahau_1229
View Structure
9
1464192-1464301
(+)
SAM
1464394-1465684 (+)
Mahau_1386
O-acetylhomoserine sulfhydrolase (9)
Mahau_1386
Operon
DOOR ID:
853200
Mahau_1386,
Mahau_1387,
Mahau_1388
View Structure
10
1604718-1604835
(-)
FMN
1603549-1604641 (-)
Mahau_1521
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Mahau_1521
Operon
DOOR ID:
853229
Mahau_1515,
Mahau_1516,
Mahau_1517,
Mahau_1518,
Mahau_1519,
Mahau_1520,
Mahau_1521
View Structure
11
1727702-1727803
(-)
purine
1726157-1727588 (-)
Mahau_1640
Xanthine/uracil/vitamin C permease
Mahau_1640
Operon
DOOR ID:
853249
Mahau_1631,
Mahau_1632,
Mahau_1633,
Mahau_1634,
Mahau_1635,
Mahau_1636,
Mahau_1637,
Mahau_1638,
Mahau_1639,
Mahau_1640
View Structure
12
1802655-1802794
(-)
ydaO-yuaA
1801671-1802526 (-)
Mahau_1711
4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase)
Mahau_1711
Single gene
DOOR ID:
3136607
Mahau_1711
View Structure
13
1959352-1959456
(-)
SAM
1958051-1959245 (-)
Mahau_1832
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Mahau_1832
Single gene
DOOR ID:
3136633
Mahau_1832
View Structure
14
2039722-2039857
(+)
ydaO-yuaA
2039881-2040598 (+)
Mahau_1920
SCP-like extracellular
Mahau_1920
Single gene
DOOR ID:
3136649
Mahau_1920
View Structure
15
2177965-2178079
(+)
TPP
2178134-2178758 (+)
Mahau_2043
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Mahau_2043
Operon
DOOR ID:
853342
Mahau_2043,
Mahau_2044,
Mahau_2045,
Mahau_2046
View Structure
16
2188281-2188408
(-)
ydaO-yuaA
2187080-2188184 (-)
Mahau_2054
NAD/NADP octopine/nopaline dehydrogenase
Mahau_2054
Single gene
DOOR ID:
3136682
Mahau_2054
View Structure
17
2456329-2456433
(-)
TPP
2455603-2456239 (-)
Mahau_2305
Proton-coupled thiamine transporter YuaJ
Mahau_2305
Single gene
DOOR ID:
3136732
Mahau_2305
View Structure
18
2538654-2538792
(-)
ydaO-yuaA
2536499-2538215 (-)
Mahau_2378
Extracellular solute-binding protein family 1
Mahau_2378
Single gene
DOOR ID:
3136761
Mahau_2378
View Structure
Genome:
Mahella australiensis 50-1 BON
(
NC_015520.1
);
Phylum:
Firmicutes
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:9:"6341-6475";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:9:"6491-7406";i:10;s:1:"+";i:11;s:10:"Mahau_0006";i:12;s:15:"NLP/P60 protein";i:13;s:10:"Mahau_0006";i:14;s:11:"Single gene";i:15;s:7:"3136248";i:16;s:10:"Mahau_0006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"385662-385736";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"385954-387019";i:10;s:1:"+";i:11;s:10:"Mahau_0348";i:12;s:21:"L-threonine aldolase ";i:13;s:10:"Mahau_0348";i:14;s:11:"Single gene";i:15;s:7:"3136339";i:16;s:10:"Mahau_0348";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"385745-385820";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"385954-387019";i:10;s:1:"+";i:11;s:10:"Mahau_0348";i:12;s:21:"L-threonine aldolase ";i:13;s:10:"Mahau_0348";i:14;s:11:"Single gene";i:15;s:7:"3136339";i:16;s:10:"Mahau_0348";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"708978-709125";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"709238-711059";i:10;s:1:"+";i:11;s:10:"Mahau_0669";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Mahau_0669";i:14;s:11:"Single gene";i:15;s:7:"3136396";i:16;s:10:"Mahau_0669";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"784769-784948";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"783659-784661";i:10;s:1:"-";i:11;s:10:"Mahau_0735";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:10:"Mahau_0735";i:14;s:6:"Operon";i:15;s:6:"853072";i:16;s:32:"Mahau_0733;Mahau_0734;Mahau_0735";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"800651-800765";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"800938-801898";i:10;s:1:"+";i:11;s:10:"Mahau_0753";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"Mahau_0753";i:14;s:6:"Operon";i:15;s:6:"853076";i:16;s:76:"Mahau_0753;Mahau_0754;Mahau_0755;Mahau_0756;Mahau_0757;Mahau_0758;Mahau_0759";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1114539-1114719";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1113397-1114450";i:10;s:1:"-";i:11;s:10:"Mahau_1080";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:10:"Mahau_1080";i:14;s:11:"Single gene";i:15;s:7:"3136468";i:16;s:10:"Mahau_1080";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1281142-1281321";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1281439-1282816";i:10;s:1:"+";i:11;s:10:"Mahau_1224";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"Mahau_1224";i:14;s:6:"Operon";i:15;s:6:"853166";i:16;s:65:"Mahau_1224;Mahau_1225;Mahau_1226;Mahau_1227;Mahau_1228;Mahau_1229";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1464192-1464301";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1464394-1465684";i:10;s:1:"+";i:11;s:10:"Mahau_1386";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:10:"Mahau_1386";i:14;s:6:"Operon";i:15;s:6:"853200";i:16;s:32:"Mahau_1386;Mahau_1387;Mahau_1388";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1604718-1604835";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1603549-1604641";i:10;s:1:"-";i:11;s:10:"Mahau_1521";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Mahau_1521";i:14;s:6:"Operon";i:15;s:6:"853229";i:16;s:76:"Mahau_1515;Mahau_1516;Mahau_1517;Mahau_1518;Mahau_1519;Mahau_1520;Mahau_1521";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1727702-1727803";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1726157-1727588";i:10;s:1:"-";i:11;s:10:"Mahau_1640";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:10:"Mahau_1640";i:14;s:6:"Operon";i:15;s:6:"853249";i:16;s:109:"Mahau_1631;Mahau_1632;Mahau_1633;Mahau_1634;Mahau_1635;Mahau_1636;Mahau_1637;Mahau_1638;Mahau_1639;Mahau_1640";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1802655-1802794";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1801671-1802526";i:10;s:1:"-";i:11;s:10:"Mahau_1711";i:12;s:60:"4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) ";i:13;s:10:"Mahau_1711";i:14;s:11:"Single gene";i:15;s:7:"3136607";i:16;s:10:"Mahau_1711";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1959352-1959456";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1958051-1959245";i:10;s:1:"-";i:11;s:10:"Mahau_1832";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"Mahau_1832";i:14;s:11:"Single gene";i:15;s:7:"3136633";i:16;s:10:"Mahau_1832";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2039722-2039857";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2039881-2040598";i:10;s:1:"+";i:11;s:10:"Mahau_1920";i:12;s:22:"SCP-like extracellular";i:13;s:10:"Mahau_1920";i:14;s:11:"Single gene";i:15;s:7:"3136649";i:16;s:10:"Mahau_1920";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2177965-2178079";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2178134-2178758";i:10;s:1:"+";i:11;s:10:"Mahau_2043";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"Mahau_2043";i:14;s:6:"Operon";i:15;s:6:"853342";i:16;s:43:"Mahau_2043;Mahau_2044;Mahau_2045;Mahau_2046";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2188281-2188408";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2187080-2188184";i:10;s:1:"-";i:11;s:10:"Mahau_2054";i:12;s:40:"NAD/NADP octopine/nopaline dehydrogenase";i:13;s:10:"Mahau_2054";i:14;s:11:"Single gene";i:15;s:7:"3136682";i:16;s:10:"Mahau_2054";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2456329-2456433";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2455603-2456239";i:10;s:1:"-";i:11;s:10:"Mahau_2305";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:10:"Mahau_2305";i:14;s:11:"Single gene";i:15;s:7:"3136732";i:16;s:10:"Mahau_2305";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_015520.1";i:2;s:31:"Mahella australiensis 50-1 BON ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2538654-2538792";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2536499-2538215";i:10;s:1:"-";i:11;s:10:"Mahau_2378";i:12;s:45:"Extracellular solute-binding protein family 1";i:13;s:10:"Mahau_2378";i:14;s:11:"Single gene";i:15;s:7:"3136761";i:16;s:10:"Mahau_2378";i:17;s:0:"";i:18;s:15:"View Structure ";}}
