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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
54306-54406
(+)
TPP
54459-55062 (+)
MPTP_0047
Substrate-specific component ThiT of thiamin ECF transporter
MPTP_0047
Single gene
DOOR ID:
3133921
MPTP_0047
View Structure
2
271404-271575
(+)
lysine
271800-273396 (+)
MPTP_0259
Amino acid ABC transporter; glutamine-binding protein/permease protein
MPTP_0259
Operon
DOOR ID:
851561
MPTP_0259,
MPTP_0260
View Structure
3
754343-754449
(+)
THF
754486-755011 (+)
MPTP_0720
Substrate-specific component FolT of folate ECF transporter
MPTP_0720
Single gene
DOOR ID:
3134173
MPTP_0720
View Structure
4
812218-812293
(-)
glutamine
809164-811951 (+)
MPTP_0780
Isoleucine--tRNA ligase (Isoleucyl-tRNA synthetase) (IleRS)
MPTP_0780
Single gene
DOOR ID:
3134192
MPTP_0780
View Structure
5
915190-915360
(+)
ykoK
915798-918459 (+)
MPTP_0873
Mg(2+) transport ATPase; P-type
MPTP_0873
Single gene
DOOR ID:
3134217
MPTP_0873
View Structure
6
937472-937583
(+)
yybP-ykoY
937669-940375 (+)
MPTP_0890
Calcium-transporting ATPase
MPTP_0890
Single gene
DOOR ID:
3134226
MPTP_0890
View Structure
7
1032494-1032592
(+)
TPP
1032674-1033031 (+)
MPTP_0977
Thiaminase II
MPTP_0977
Single gene
DOOR ID:
3134266
MPTP_0977
View Structure
8
1120483-1120605
(+)
FMN
1120731-1121328 (+)
MPTP_1058
Riboflavin transporter
MPTP_1058
Single gene
DOOR ID:
3134300
MPTP_1058
View Structure
9
1198450-1198494
(-)
PreQ1
1197453-1198428 (-)
MPTP_1126
PreQ1-regulated inosine-uridine nucleosidehydrolase
MPTP_1126
Operon
DOOR ID:
851745
MPTP_1125,
MPTP_1126
View Structure
10
1442020-1442117
(-)
purine
1441329-1441911 (-)
MPTP_1364
Xanthine phosphoribosyltransferase (XPRTase) (2)
MPTP_1364
Operon
DOOR ID:
851791
MPTP_1363,
MPTP_1364
View Structure
11
1543760-1543791
(-)
PreQ1
1542598-1543309 (+)
MPTP_1492
MPTP_1492
Single gene
DOOR ID:
3134442
MPTP_1492
View Structure
12
1723951-1724038
(-)
SMK_box
1721139-1722606 (-)
MPTP_1667
MPTP_1667
Single gene
DOOR ID:
3134496
MPTP_1667
View Structure
Genome:
Melissococcus plutonius ATCC 35311
(
NC_015516.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"54306-54406";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"54459-55062";i:10;s:1:"+";i:11;s:9:"MPTP_0047";i:12;s:60:"Substrate-specific component ThiT of thiamin ECF transporter";i:13;s:9:"MPTP_0047";i:14;s:11:"Single gene";i:15;s:7:"3133921";i:16;s:9:"MPTP_0047";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"271404-271575";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"271800-273396";i:10;s:1:"+";i:11;s:9:"MPTP_0259";i:12;s:70:"Amino acid ABC transporter; glutamine-binding protein/permease protein";i:13;s:9:"MPTP_0259";i:14;s:6:"Operon";i:15;s:6:"851561";i:16;s:19:"MPTP_0259;MPTP_0260";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"754343-754449";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"754486-755011";i:10;s:1:"+";i:11;s:9:"MPTP_0720";i:12;s:59:"Substrate-specific component FolT of folate ECF transporter";i:13;s:9:"MPTP_0720";i:14;s:11:"Single gene";i:15;s:7:"3134173";i:16;s:9:"MPTP_0720";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"812218-812293";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"809164-811951";i:10;s:1:"+";i:11;s:9:"MPTP_0780";i:12;s:60:"Isoleucine--tRNA ligase (Isoleucyl-tRNA synthetase) (IleRS)";i:13;s:9:"MPTP_0780";i:14;s:11:"Single gene";i:15;s:7:"3134192";i:16;s:9:"MPTP_0780";i:17;s:42:"isoleucyl-tRNA aminoacylation [GO:0006428]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"915190-915360";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"915798-918459";i:10;s:1:"+";i:11;s:9:"MPTP_0873";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:9:"MPTP_0873";i:14;s:11:"Single gene";i:15;s:7:"3134217";i:16;s:9:"MPTP_0873";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"937472-937583";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"937669-940375";i:10;s:1:"+";i:11;s:9:"MPTP_0890";i:12;s:28:"Calcium-transporting ATPase ";i:13;s:9:"MPTP_0890";i:14;s:11:"Single gene";i:15;s:7:"3134226";i:16;s:9:"MPTP_0890";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1032494-1032592";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1032674-1033031";i:10;s:1:"+";i:11;s:9:"MPTP_0977";i:12;s:14:"Thiaminase II ";i:13;s:9:"MPTP_0977";i:14;s:11:"Single gene";i:15;s:7:"3134266";i:16;s:9:"MPTP_0977";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1120483-1120605";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1120731-1121328";i:10;s:1:"+";i:11;s:9:"MPTP_1058";i:12;s:22:"Riboflavin transporter";i:13;s:9:"MPTP_1058";i:14;s:11:"Single gene";i:15;s:7:"3134300";i:16;s:9:"MPTP_1058";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1198450-1198494";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1197453-1198428";i:10;s:1:"-";i:11;s:9:"MPTP_1126";i:12;s:52:"PreQ1-regulated inosine-uridine nucleosidehydrolase ";i:13;s:9:"MPTP_1126";i:14;s:6:"Operon";i:15;s:6:"851745";i:16;s:19:"MPTP_1125;MPTP_1126";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1442020-1442117";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1441329-1441911";i:10;s:1:"-";i:11;s:9:"MPTP_1364";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"MPTP_1364";i:14;s:6:"Operon";i:15;s:6:"851791";i:16;s:19:"MPTP_1363;MPTP_1364";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1543760-1543791";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1542598-1543309";i:10;s:1:"+";i:11;s:9:"MPTP_1492";i:12;s:0:"";i:13;s:9:"MPTP_1492";i:14;s:11:"Single gene";i:15;s:7:"3134442";i:16;s:9:"MPTP_1492";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015516.1";i:2;s:35:"Melissococcus plutonius ATCC 35311 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1723951-1724038";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1721139-1722606";i:10;s:1:"-";i:11;s:9:"MPTP_1667";i:12;s:0:"";i:13;s:9:"MPTP_1667";i:14;s:11:"Single gene";i:15;s:7:"3134496";i:16;s:9:"MPTP_1667";i:17;s:0:"";i:18;s:15:"View Structure ";}}
