About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
263505-263604
(+)
TPP
263642-264173 (+)
Lbuc_0246
ThiW protein
Lbuc_0246
Single gene
DOOR ID:
3115505
Lbuc_0246
View Structure
2
567416-567525
(+)
TPP
567752-568541 (+)
Lbuc_0525
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Lbuc_0525
Single gene
DOOR ID:
3115636
Lbuc_0525
View Structure
3
586871-586961
(+)
TPP
587064-587778 (+)
Lbuc_0546
Transcriptional activator; TenA family
Lbuc_0546
Single gene
DOOR ID:
3115644
Lbuc_0546
View Structure
4
1097664-1097785
(+)
FMN
1097870-1098455 (+)
Lbuc_1037
Riboflavin transporter
Lbuc_1037
Single gene
DOOR ID:
3115809
Lbuc_1037
View Structure
5
1158071-1158185
(+)
THF
1158237-1158768 (+)
Lbuc_1092
Lbuc_1092
Operon
DOOR ID:
841096
Lbuc_1091,
Lbuc_1092
View Structure
6
1345552-1345635
(-)
SMK_box
1342809-1344288 (-)
Lbuc_1274
Drug resistance transporter; EmrB/QacA subfamily
Lbuc_1274
Operon
DOOR ID:
841133
Lbuc_1274,
Lbuc_1275
View Structure
7
1796851-1797022
(-)
lysine
1795269-1796754 (-)
Lbuc_1741
Amino acid permease-associated region
Lbuc_1741
Single gene
DOOR ID:
3115981
Lbuc_1741
View Structure
8
2049635-2049724
(+)
TPP
2049860-2050451 (+)
Lbuc_1962
ABC-type thiamin-related transport system; permease component 1
Lbuc_1962
Operon
DOOR ID:
841270
Lbuc_1962,
Lbuc_1963,
Lbuc_1964,
Lbuc_1965,
Lbuc_1966
View Structure
9
2079078-2079259
(-)
lysine
2077438-2078746 (-)
Lbuc_1988
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Lbuc_1988
Single gene
DOOR ID:
3116084
Lbuc_1988
View Structure
10
2253532-2253721
(-)
cobalamin
2251048-2253340 (-)
Lbuc_2142
Lbuc_2142
Operon
DOOR ID:
841303
Lbuc_2141,
Lbuc_2142
View Structure
11
2286284-2286376
(+)
TPP
2286503-2286701 (+)
Lbuc_2167
Thiamine biosynthesis protein ThiS
Lbuc_2167
Single gene
DOOR ID:
3116181
Lbuc_2167
View Structure
12
2293453-2293618
(+)
ykoK
2294262-2295534 (-)
Lbuc_2175
Transposase IS204/IS1001/IS1096/IS1165 family protein
Lbuc_2175
Single gene
DOOR ID:
3116183
Lbuc_2175
View Structure
13
2488083-2488175
(-)
TPP
2486680-2487958 (-)
Lbuc_2348
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (8)
Lbuc_2348
Operon
DOOR ID:
841344
Lbuc_2347,
Lbuc_2348
View Structure
Genome:
Lactobacillus buchneri NRRL B-30929
(
NC_015428.1
);
Phylum:
Firmicutes
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"263505-263604";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"263642-264173";i:10;s:1:"+";i:11;s:9:"Lbuc_0246";i:12;s:12:"ThiW protein";i:13;s:9:"Lbuc_0246";i:14;s:11:"Single gene";i:15;s:7:"3115505";i:16;s:9:"Lbuc_0246";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"567416-567525";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"567752-568541";i:10;s:1:"+";i:11;s:9:"Lbuc_0525";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Lbuc_0525";i:14;s:11:"Single gene";i:15;s:7:"3115636";i:16;s:9:"Lbuc_0525";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"586871-586961";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"587064-587778";i:10;s:1:"+";i:11;s:9:"Lbuc_0546";i:12;s:38:"Transcriptional activator; TenA family";i:13;s:9:"Lbuc_0546";i:14;s:11:"Single gene";i:15;s:7:"3115644";i:16;s:9:"Lbuc_0546";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1097664-1097785";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1097870-1098455";i:10;s:1:"+";i:11;s:9:"Lbuc_1037";i:12;s:22:"Riboflavin transporter";i:13;s:9:"Lbuc_1037";i:14;s:11:"Single gene";i:15;s:7:"3115809";i:16;s:9:"Lbuc_1037";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1158071-1158185";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1158237-1158768";i:10;s:1:"+";i:11;s:9:"Lbuc_1092";i:12;s:0:"";i:13;s:9:"Lbuc_1092";i:14;s:6:"Operon";i:15;s:6:"841096";i:16;s:19:"Lbuc_1091;Lbuc_1092";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1345552-1345635";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1342809-1344288";i:10;s:1:"-";i:11;s:9:"Lbuc_1274";i:12;s:48:"Drug resistance transporter; EmrB/QacA subfamily";i:13;s:9:"Lbuc_1274";i:14;s:6:"Operon";i:15;s:6:"841133";i:16;s:19:"Lbuc_1274;Lbuc_1275";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1796851-1797022";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1795269-1796754";i:10;s:1:"-";i:11;s:9:"Lbuc_1741";i:12;s:37:"Amino acid permease-associated region";i:13;s:9:"Lbuc_1741";i:14;s:11:"Single gene";i:15;s:7:"3115981";i:16;s:9:"Lbuc_1741";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2049635-2049724";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2049860-2050451";i:10;s:1:"+";i:11;s:9:"Lbuc_1962";i:12;s:63:"ABC-type thiamin-related transport system; permease component 1";i:13;s:9:"Lbuc_1962";i:14;s:6:"Operon";i:15;s:6:"841270";i:16;s:49:"Lbuc_1962;Lbuc_1963;Lbuc_1964;Lbuc_1965;Lbuc_1966";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2079078-2079259";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2077438-2078746";i:10;s:1:"-";i:11;s:9:"Lbuc_1988";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"Lbuc_1988";i:14;s:11:"Single gene";i:15;s:7:"3116084";i:16;s:9:"Lbuc_1988";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2253532-2253721";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2251048-2253340";i:10;s:1:"-";i:11;s:9:"Lbuc_2142";i:12;s:0:"";i:13;s:9:"Lbuc_2142";i:14;s:6:"Operon";i:15;s:6:"841303";i:16;s:19:"Lbuc_2141;Lbuc_2142";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2286284-2286376";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2286503-2286701";i:10;s:1:"+";i:11;s:9:"Lbuc_2167";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Lbuc_2167";i:14;s:11:"Single gene";i:15;s:7:"3116181";i:16;s:9:"Lbuc_2167";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2293453-2293618";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2294262-2295534";i:10;s:1:"-";i:11;s:9:"Lbuc_2175";i:12;s:53:"Transposase IS204/IS1001/IS1096/IS1165 family protein";i:13;s:9:"Lbuc_2175";i:14;s:11:"Single gene";i:15;s:7:"3116183";i:16;s:9:"Lbuc_2175";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015428.1";i:2;s:36:"Lactobacillus buchneri NRRL B-30929 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2488083-2488175";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2486680-2487958";i:10;s:1:"-";i:11;s:9:"Lbuc_2348";i:12;s:73:"Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (8)";i:13;s:9:"Lbuc_2348";i:14;s:6:"Operon";i:15;s:6:"841344";i:16;s:19:"Lbuc_2347;Lbuc_2348";i:17;s:0:"";i:18;s:15:"View Structure ";}}
