Genome: Clostridium lentocellum DSM 5427 (NC_015275.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 135919-136018 (-)SAM135277-135838 (-)Clole_0096

Clole_0096Single gene

DOOR ID: 3085265		Clole_0096 View Structure
2 461339-461464 (+)SAM461601-463002 (+)Clole_0365

Capsule synthesis protein; CapA		Clole_0365Single gene

DOOR ID: 3085382		Clole_0365 View Structure
3 474755-474880 (+)SAM475017-476358 (+)Clole_0377

Capsule synthesis protein; CapA		Clole_0377Operon

DOOR ID: 824418		Clole_0377,
Clole_0378,
Clole_0379,
Clole_0380		 View Structure
4 831857-832030 (+)cobalamin832260-833262 (+)Clole_0659

ABC-type transporter; periplasmic subunit		Clole_0659Operon

DOOR ID: 824471		Clole_0659,
Clole_0660,
Clole_0661		 View Structure
5 1331119-1331225 (+)TPP1331393-1332701 (+)Clole_1158

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Clole_1158Single gene

DOOR ID: 3085670		Clole_1158 View Structure
6 1480179-1480355 (+)ykoK1480642-1481974 (+)Clole_1298

Magnesium transporter MgtE		Clole_1298Single gene

DOOR ID: 3085725		Clole_1298 View Structure
7 1635030-1635131 (-)THF1634421-1634964 (-)Clole_1442

Clole_1442Single gene

DOOR ID: 3085776		Clole_1442 View Structure
8 1777097-1777202 (+)SAM1777291-1778305 (+)Clole_1588

Methionine import ATP-binding protein MetN 		Clole_1588Operon

DOOR ID: 824641		Clole_1588,
Clole_1589,
Clole_1590		 View Structure
9 1811740-1811862 (+)FMN1811972-1812599 (+)Clole_1617

Riboflavin transporter		Clole_1617Single gene

DOOR ID: 3085830		Clole_1617 View Structure
10 2176369-2176544 (+)lysine2176657-2178196 (+)Clole_1972

Na+/H+ antiporter NhaC-like protein		Clole_1972Single gene

DOOR ID: 3085923		Clole_1972 View Structure
11 2204933-2205007 (+)fluoride2205060-2206239 (+)Clole_1999

Sodium/hydrogen exchanger		Clole_1999Single gene

DOOR ID: 3085937		Clole_1999 View Structure
12 2249026-2249188 (+)glmS2249226-2251056 (+)Clole_2038

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Clole_2038Single gene

DOOR ID: 3085955		Clole_2038 View Structure
13 2447787-2447882 (-)glycine2447011-2447704 (-)Clole_2226

Clole_2226Single gene

DOOR ID: 3086010		Clole_2226 View Structure
14 2979650-2979765 (-)FMN2978302-2979394 (-)Clole_2717

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Clole_2717Operon

DOOR ID: 824864		Clole_2714,
Clole_2715,
Clole_2716,
Clole_2717		 View Structure
15 3199366-3199550 (+)lysine3199735-3200620 (+)Clole_2955

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Clole_2955Operon

DOOR ID: 824908		Clole_2955,
Clole_2956		 View Structure
16 3408252-3408361 (-)TPP3407357-3408182 (-)Clole_3148

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Clole_3148Operon

DOOR ID: 824949		Clole_3147,
Clole_3148		 View Structure
17 3481412-3481495 (-)ZMP-ZTP3480582-3481290 (-)Clole_3208

Inosine monophosphate cyclohydrolase-like protein		Clole_3208Single gene

DOOR ID: 3086344		Clole_3208 View Structure
18 3490915-3491016 (-)purine3489518-3490856 (-)Clole_3217

Xanthine permease		Clole_3217Operon

DOOR ID: 824963		Clole_3216,
Clole_3217		 View Structure
19 3741960-3742137 (-)cobalamin3740093-3741623 (-)Clole_3425

Cobyric acid synthase		Clole_3425Operon

DOOR ID: 825000		Clole_3422,
Clole_3423,
Clole_3424,
Clole_3425		 View Structure
20 3780356-3780440 (-)Nico3779385-3780273 (-)Clole_3454

Cation diffusion facilitator family transporter		Clole_3454Single gene

DOOR ID: 3086451		Clole_3454 View Structure
21 3787104-3787150 (+)PreQ13787188-3787692 (+)Clole_3462

Clole_3462Operon

DOOR ID: 825009		Clole_3462,
Clole_3463		 View Structure
22 3923225-3923325 (-)SAM3921946-3923137 (-)Clole_3603

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Clole_3603Single gene

DOOR ID: 3086472		Clole_3603 View Structure
23 4594014-4594127 (-)SAM4592702-4593860 (-)Clole_4169

Aminotransferase 		Clole_4169Operon

DOOR ID: 825158		Clole_4163,
Clole_4164,
Clole_4165,
Clole_4166,
Clole_4167,
Clole_4168,
Clole_4169		 View Structure
24 4664128-4664228 (+)TPP4664314-4664980 (+)Clole_4230

Proton-coupled thiamine transporter YuaJ		Clole_4230Single gene

DOOR ID: 3086685		Clole_4230 View Structure
25 4695982-4696073 (-)glycine4694283-4695744 (-)Clole_4255

Amino acid carrier protein		Clole_4255Single gene

DOOR ID: 3086693		Clole_4255 View Structure
26 4696083-4696162 (-)glycine4694283-4695744 (-)Clole_4255

Amino acid carrier protein		Clole_4255Single gene

DOOR ID: 3086693		Clole_4255 View Structure