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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80461-80568
(+)
glycine
80714-81815 (+)
gcvT
Aminomethyltransferase (0)
ACMV_00730
Operon
DOOR ID:
819939
ACMV_00730
(gcvT)
,
ACMV_00740
(gcvH)
,
ACMV_00750
(gcvP)
View Structure
2
194119-194164
(-)
glutamine
193329-193674 (+)
ACMV_01680
ACMV_01680
Operon
DOOR ID:
819954
ACMV_01630,
ACMV_01640,
ACMV_01650,
ACMV_01660
(kup)
,
ACMV_01670,
ACMV_01680
View Structure
3
384521-384582
(-)
fluoride
383684-384017 (-)
ACMV_03340
ACMV_03340
Operon
DOOR ID:
819996
ACMV_03340,
ACMV_03350
(crcB)
View Structure
4
769369-769431
(+)
fluoride
769517-770471 (+)
ACMV_06770
ACMV_06770
Operon
DOOR ID:
820072
ACMV_06770,
ACMV_06780,
ACMV_06790,
ACMV_06800,
ACMV_06810,
ACMV_06820
View Structure
5
1054028-1054132
(+)
TPP
1054174-1055995 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ACMV_09220
Operon
DOOR ID:
820122
ACMV_09220
(thiC)
,
ACMV_09230
(thiO)
,
ACMV_09240
(thiS)
,
ACMV_09250
(thiG)
View Structure
6
2713714-2713948
(+)
cobalamin
2714083-2716393 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
ACMV_24530
Operon
DOOR ID:
820454
ACMV_24530
(metE)
,
ACMV_24540
View Structure
7
3333849-3333898
(-)
mini-ykkC
3333044-3333827 (-)
ACMV_30580
ACMV_30580
Operon
DOOR ID:
820579
ACMV_30550,
ACMV_30560,
ACMV_30570,
ACMV_30580,
ACMV_30590,
ACMV_30600,
ACMV_30610
View Structure
8
3336623-3336733
(-)
ykkC-yxkD
3335461-3336541 (-)
ACMV_30610
Putative ABC transporter substrate-binding protein
ACMV_30610
Operon
DOOR ID:
820579
ACMV_30550,
ACMV_30560,
ACMV_30570,
ACMV_30580,
ACMV_30590,
ACMV_30600,
ACMV_30610
View Structure
9
3744178-3744386
(-)
cobalamin
3742056-3744072 (-)
ACMV_34420
Putative TonB-dependent receptor
ACMV_34420
Single gene
DOOR ID:
3078000
ACMV_34420
View Structure
Genome:
Acidiphilium multivorum AIU301
(
NC_015186.1
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015186.1";i:2;s:30:"Acidiphilium multivorum AIU301";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2713714-2713948";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2714083-2716393";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"ACMV_24530";i:14;s:6:"Operon";i:15;s:6:"820454";i:16;s:27:"ACMV_24530(metE);ACMV_24540";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015186.1";i:2;s:30:"Acidiphilium multivorum AIU301";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3333849-3333898";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3333044-3333827";i:10;s:1:"-";i:11;s:10:"ACMV_30580";i:12;s:0:"";i:13;s:10:"ACMV_30580";i:14;s:6:"Operon";i:15;s:6:"820579";i:16;s:76:"ACMV_30550;ACMV_30560;ACMV_30570;ACMV_30580;ACMV_30590;ACMV_30600;ACMV_30610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015186.1";i:2;s:30:"Acidiphilium multivorum AIU301";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3336623-3336733";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3335461-3336541";i:10;s:1:"-";i:11;s:10:"ACMV_30610";i:12;s:50:"Putative ABC transporter substrate-binding protein";i:13;s:10:"ACMV_30610";i:14;s:6:"Operon";i:15;s:6:"820579";i:16;s:76:"ACMV_30550;ACMV_30560;ACMV_30570;ACMV_30580;ACMV_30590;ACMV_30600;ACMV_30610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015186.1";i:2;s:30:"Acidiphilium multivorum AIU301";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3744178-3744386";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3742056-3744072";i:10;s:1:"-";i:11;s:10:"ACMV_34420";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:10:"ACMV_34420";i:14;s:11:"Single gene";i:15;s:7:"3078000";i:16;s:10:"ACMV_34420";i:17;s:0:"";i:18;s:15:"View Structure ";}}
