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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
304739-304785
(+)
mini-ykkC
304804-305125 (+)
Selin_0267
Selin_0267
Operon
DOOR ID:
786442
Selin_0267,
Selin_0268
View Structure
2
1012091-1012194
(+)
SAM
1012253-1013366 (+)
Selin_0938
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Selin_0938
Single gene
DOOR ID:
3018751
Selin_0938
View Structure
3
1344883-1345061
(+)
cobalamin
1345162-1345690 (+)
Selin_1225
Selin_1225
Operon
DOOR ID:
786649
Selin_1225,
Selin_1226,
Selin_1227,
Selin_1228
View Structure
4
1654557-1654651
(+)
TPP
1656038-1656236 (+)
Selin_1515
Thiamine biosynthesis protein ThiS
Selin_1515
Operon
DOOR ID:
786703
Selin_1513,
Selin_1514,
Selin_1515
View Structure
5
1753186-1753367
(+)
cobalamin
1753471-1755322 (+)
Selin_1606
TonB-dependent receptor plug
Selin_1606
Operon
DOOR ID:
786723
Selin_1606,
Selin_1607,
Selin_1608,
Selin_1609,
Selin_1610,
Selin_1611,
Selin_1612
View Structure
6
1834531-1834722
(+)
cobalamin
1834972-1836034 (+)
Selin_1679
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Selin_1679
Operon
DOOR ID:
786737
Selin_1679,
Selin_1680,
Selin_1681,
Selin_1682,
Selin_1683,
Selin_1684
View Structure
7
2208352-2208526
(+)
cobalamin
2208737-2211038 (+)
Selin_2015
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Selin_2015
Single gene
DOOR ID:
3019025
Selin_2015
View Structure
8
2358899-2359016
(+)
SAM
2359083-2360229 (+)
Selin_2138
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Selin_2138
Single gene
DOOR ID:
3019065
Selin_2138
View Structure
9
2524428-2524607
(-)
cobalamin
2522181-2524248 (-)
Selin_2293
Anaerobic ribonucleoside-triphosphate reductase
Selin_2293
Operon
DOOR ID:
786875
Selin_2291,
Selin_2292,
Selin_2293
View Structure
Genome:
Desulfurispirillum indicum S5
(
NC_014836.1
);
Phylum:
Chrysiogenetes
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nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014836.1";i:2;s:30:"Desulfurispirillum indicum S5 ";i:3;s:14:"Chrysiogenetes";i:4;s:6:"118001";i:5;s:15:"2208352-2208526";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2208737-2211038";i:10;s:1:"+";i:11;s:10:"Selin_2015";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:10:"Selin_2015";i:14;s:11:"Single gene";i:15;s:7:"3019025";i:16;s:10:"Selin_2015";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014836.1";i:2;s:30:"Desulfurispirillum indicum S5 ";i:3;s:14:"Chrysiogenetes";i:4;s:6:"118001";i:5;s:15:"2358899-2359016";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2359083-2360229";i:10;s:1:"+";i:11;s:10:"Selin_2138";i:12;s:56:"Cys/Met metabolism pyridoxal-phosphate-dependent protein";i:13;s:10:"Selin_2138";i:14;s:11:"Single gene";i:15;s:7:"3019065";i:16;s:10:"Selin_2138";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014836.1";i:2;s:30:"Desulfurispirillum indicum S5 ";i:3;s:14:"Chrysiogenetes";i:4;s:6:"118001";i:5;s:15:"2524428-2524607";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2522181-2524248";i:10;s:1:"-";i:11;s:10:"Selin_2293";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:10:"Selin_2293";i:14;s:6:"Operon";i:15;s:6:"786875";i:16;s:32:"Selin_2291;Selin_2292;Selin_2293";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}
