Genome: Geobacillus sp. Y4.1MC1 (NC_014650.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 171520-171689 (+)glmS171815-173618 (+)GY4MC1_0158

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		GY4MC1_0158Single gene

DOOR ID: 2975538		GY4MC1_0158 View Structure
2 224762-224908 (+)ydaO-yuaA225036-226872 (+)GY4MC1_0201

GY4MC1_0201Single gene

DOOR ID: 2975554		GY4MC1_0201 View Structure
3 537832-537940 (+)SAM538035-539064 (+)GY4MC1_0502

Methionine import ATP-binding protein MetN 		GY4MC1_0502Operon

DOOR ID: 763466		GY4MC1_0502,
GY4MC1_0503,
GY4MC1_0504		 View Structure
4 743699-743813 (+)SAM743976-745188 (+)GY4MC1_0744

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		GY4MC1_0744Single gene

DOOR ID: 2975738		GY4MC1_0744 View Structure
5 900467-900647 (+)lysine900758-901985 (+)GY4MC1_0896

Aspartokinase 		GY4MC1_0896Single gene

DOOR ID: 2975805		GY4MC1_0896 View Structure
6 1132994-1133082 (+)glycine1133238-1134333 (+)GY4MC1_1140

Aminomethyltransferase (0) (Glycine cleavage system T protein)		GY4MC1_1140Operon

DOOR ID: 763590		GY4MC1_1140,
GY4MC1_1141,
GY4MC1_1142		 View Structure
7 1244852-1244986 (+)FMN1245310-1246396 (+)GY4MC1_1260

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		GY4MC1_1260Operon

DOOR ID: 763614		GY4MC1_1260,
GY4MC1_1261,
GY4MC1_1262		 View Structure
8 1269192-1269408 (+)cobalamin1269544-1270501 (+)GY4MC1_1288

Periplasmic binding protein		GY4MC1_1288Operon

DOOR ID: 763620		GY4MC1_1288,
GY4MC1_1289,
GY4MC1_1290,
GY4MC1_1291,
GY4MC1_1292,
GY4MC1_1293,
GY4MC1_1294,
GY4MC1_1295,
GY4MC1_1296,
GY4MC1_1297,
GY4MC1_1298		 View Structure
9 1545954-1546063 (-)SAM1544796-1545810 (-)GY4MC1_1578

Methionine import ATP-binding protein MetN 		GY4MC1_1578Operon

DOOR ID: 763667		GY4MC1_1575,
GY4MC1_1576,
GY4MC1_1577,
GY4MC1_1578		 View Structure
10 1574728-1574841 (+)TPP1574900-1575710 (+)GY4MC1_1605

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		GY4MC1_1605Operon

DOOR ID: 763674		GY4MC1_1605,
GY4MC1_1606,
GY4MC1_1607		 View Structure
11 1580554-1580744 (-)lysine1578948-1580421 (-)GY4MC1_1611

Amino acid permease-associated region		GY4MC1_1611Single gene

DOOR ID: 2976023		GY4MC1_1611 View Structure
12 1617897-1617998 (+)purine1618123-1618711 (+)GY4MC1_1644

Xanthine phosphoribosyltransferase (XPRTase) (2)		GY4MC1_1644Operon

DOOR ID: 763681		GY4MC1_1644,
GY4MC1_1645		 View Structure
13 2000193-2000327 (-)FMN1999454-2000036 (-)GY4MC1_2026

Riboflavin transporter		GY4MC1_2026Single gene

DOOR ID: 2976191		GY4MC1_2026 View Structure
14 2062099-2062291 (-)cobalamin2061606-2061975 (-)GY4MC1_2098

NADH dehydrogenase (Ubiquinone) 24 kDa subunit		GY4MC1_2098Operon

DOOR ID: 763752		GY4MC1_2080,
GY4MC1_2081,
GY4MC1_2082,
GY4MC1_2083,
GY4MC1_2084,
GY4MC1_2085,
GY4MC1_2086,
GY4MC1_2087,
GY4MC1_2088,
GY4MC1_2089,
GY4MC1_2090,
GY4MC1_2091,
GY4MC1_2092,
GY4MC1_2093,
GY4MC1_2094,
GY4MC1_2095,
GY4MC1_2096,
GY4MC1_2097,
GY4MC1_2098		 View Structure
15 2278051-2278167 (+)SAM2278374-2279451 (+)GY4MC1_2295

Iron-containing alcohol dehydrogenase		GY4MC1_2295Single gene

DOOR ID: 2976280		GY4MC1_2295 View Structure
16 2483152-2483257 (-)SAM2482750-2483083 (-)GY4MC1_2496

GY4MC1_2496Operon

DOOR ID: 763817		GY4MC1_2495,
GY4MC1_2496		 View Structure
17 2878466-2878510 (-)PreQ12877720-2878389 (-)GY4MC1_2895

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		GY4MC1_2895Operon

DOOR ID: 763888		GY4MC1_2892,
GY4MC1_2893,
GY4MC1_2894,
GY4MC1_2895		 View Structure
18 2900383-2900491 (-)SAM2899075-2900317 (-)GY4MC1_2913

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		GY4MC1_2913Operon

DOOR ID: 763890		GY4MC1_2910,
GY4MC1_2911,
GY4MC1_2912,
GY4MC1_2913		 View Structure
19 2902783-2902946 (+)SAM2903026-2904229 (+)GY4MC1_2916

Methylthioribose kinase (MTR kinase) (00)		GY4MC1_2916Operon

DOOR ID: 763891		GY4MC1_2916,
GY4MC1_2917,
GY4MC1_2918,
GY4MC1_2919,
GY4MC1_2920		 View Structure
20 2935817-2935878 (-)fluoride2935359-2935761 (-)GY4MC1_2946

Putative fluoride ion transporter CrcB		GY4MC1_2946Operon

DOOR ID: 763900		GY4MC1_2945,
GY4MC1_2946		 View Structure
21 2991782-2991893 (-)SAM2990599-2991703 (-)GY4MC1_2992

Cys/Met metabolism pyridoxal-phosphate-dependent protein		GY4MC1_2992Operon

DOOR ID: 763906		GY4MC1_2991,
GY4MC1_2992		 View Structure
22 3070373-3070475 (+)SAM3070552-3072403 (+)GY4MC1_3089

Homocysteine S-methyltransferase		GY4MC1_3089Operon

DOOR ID: 763924		GY4MC1_3089,
GY4MC1_3090		 View Structure
23 3177849-3177956 (-)TPP3177050-3177749 (-)GY4MC1_3191

Aminopyrimidine aminohydrolase 		GY4MC1_3191Operon

DOOR ID: 763942		GY4MC1_3183,
GY4MC1_3184,
GY4MC1_3185,
GY4MC1_3186,
GY4MC1_3187,
GY4MC1_3188,
GY4MC1_3189,
GY4MC1_3190,
GY4MC1_3191		 View Structure
24 3188633-3188830 (+)cobalamin3188963-3191249 (+)GY4MC1_3200

Ribonucleoside-diphosphate reductase 		GY4MC1_3200Operon

DOOR ID: 763944		GY4MC1_3200,
GY4MC1_3201		 View Structure
25 3193444-3193530 (-)yybP-ykoY3193027-3193300 (-)GY4MC1_3203

GY4MC1_3203Operon

DOOR ID: 763945		GY4MC1_3202,
GY4MC1_3203		 View Structure
26 3194631-3194734 (-)ykkC-yxkD3194253-3194574 (-)GY4MC1_3205

Small multidrug resistance protein		GY4MC1_3205Single gene

DOOR ID: 2976612		GY4MC1_3205 View Structure
27 3391382-3391496 (-)TPP3389509-3391231 (-)GY4MC1_3407

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		GY4MC1_3407Operon

DOOR ID: 763979		GY4MC1_3406,
GY4MC1_3407		 View Structure
28 3532098-3532199 (-)purine3531493-3531982 (-)GY4MC1_3543

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		GY4MC1_3543Operon

DOOR ID: 764003		GY4MC1_3532,
GY4MC1_3533,
GY4MC1_3534,
GY4MC1_3535,
GY4MC1_3536,
GY4MC1_3537,
GY4MC1_3538,
GY4MC1_3539,
GY4MC1_3540,
GY4MC1_3541,
GY4MC1_3542,
GY4MC1_3543		 View Structure
29 3546070-3546171 (-)purine3544641-3545967 (-)GY4MC1_3552

Xanthine/uracil/vitamin C permease		GY4MC1_3552Single gene

DOOR ID: 2976746		GY4MC1_3552 View Structure
30 3547865-3547966 (-)purine3546265-3547804 (-)GY4MC1_3553

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		GY4MC1_3553Single gene

DOOR ID: 2976747		GY4MC1_3553 View Structure