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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
241165-241257
(+)
TPP
241287-242763 (+)
thiM
Multifunctional fusion protein [Includes: Thiamine-phosphate synthase (TP synthase) (TPS) (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)]
HMPREF0421_20208
Operon
DOOR ID:
763111
HMPREF0421_20208
(thiM)
,
HMPREF0421_20209
(theD)
View Structure
2
303654-303757
(+)
TPP
304889-305096 (+)
thiS
Thiamine biosynthesis protein ThiS
HMPREF0421_20254
Operon
DOOR ID:
763120
HMPREF0421_20254
(thiS)
,
HMPREF0421_20255
(thiG)
,
HMPREF0421_20256
(thiF)
View Structure
3
626311-626413
(+)
TPP
626448-627069 (+)
HMPREF0421_20504
HMPREF0421_20504
Single gene
DOOR ID:
2975159
HMPREF0421_20504
View Structure
4
679496-679597
(+)
TPP
679885-682498 (+)
HMPREF0421_20553
Cobalt transport protein
HMPREF0421_20553
Single gene
DOOR ID:
2975188
HMPREF0421_20553
View Structure
5
705075-705178
(+)
TPP
705213-705816 (+)
HMPREF0421_20570
HMPREF0421_20570
Single gene
DOOR ID:
2975197
HMPREF0421_20570
View Structure
6
781911-782018
(-)
TPP
778581-779121 (-)
cypB
Peptidyl-prolyl cis-trans isomerase (PPIase)
HMPREF0421_20626
Single gene
DOOR ID:
2975219
HMPREF0421_20626
(cypB)
View Structure
7
888186-888288
(-)
TPP
886205-887210 (-)
HMPREF0421_20716
HMPREF0421_20716
Operon
DOOR ID:
763224
HMPREF0421_20715,
HMPREF0421_20716
View Structure
8
895878-896069
(+)
lysine
896120-897569 (+)
lysP
Amino acid permease
HMPREF0421_20724
Single gene
DOOR ID:
2975257
HMPREF0421_20724
(lysP)
View Structure
9
1031412-1031563
(+)
FMN
1032335-1034588 (+)
HMPREF0421_20844
Cobalt ABC transporter; ATP-binding protein
HMPREF0421_20844
Single gene
DOOR ID:
2975302
HMPREF0421_20844
View Structure
10
1491064-1491224
(-)
ykoK
1490737-1490998 (-)
HMPREF0421_21222
HMPREF0421_21222
Operon
DOOR ID:
763341
HMPREF0421_21221,
HMPREF0421_21222
View Structure
Genome:
Gardnerella vaginalis ATCC 14019
(
NC_014644.1
);
Phylum:
Actinobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"303654-303757";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"304889-305096";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:16:"HMPREF0421_20254";i:14;s:6:"Operon";i:15;s:6:"763120";i:16;s:68:"HMPREF0421_20254(thiS);HMPREF0421_20255(thiG);HMPREF0421_20256(thiF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"626311-626413";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"626448-627069";i:10;s:1:"+";i:11;s:16:"HMPREF0421_20504";i:12;s:0:"";i:13;s:16:"HMPREF0421_20504";i:14;s:11:"Single gene";i:15;s:7:"2975159";i:16;s:16:"HMPREF0421_20504";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"679496-679597";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"679885-682498";i:10;s:1:"+";i:11;s:16:"HMPREF0421_20553";i:12;s:24:"Cobalt transport protein";i:13;s:16:"HMPREF0421_20553";i:14;s:11:"Single gene";i:15;s:7:"2975188";i:16;s:16:"HMPREF0421_20553";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"705075-705178";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"705213-705816";i:10;s:1:"+";i:11;s:16:"HMPREF0421_20570";i:12;s:0:"";i:13;s:16:"HMPREF0421_20570";i:14;s:11:"Single gene";i:15;s:7:"2975197";i:16;s:16:"HMPREF0421_20570";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"781911-782018";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"778581-779121";i:10;s:1:"-";i:11;s:4:"cypB";i:12;s:45:"Peptidyl-prolyl cis-trans isomerase (PPIase) ";i:13;s:16:"HMPREF0421_20626";i:14;s:11:"Single gene";i:15;s:7:"2975219";i:16;s:22:"HMPREF0421_20626(cypB)";i:17;s:28:"protein folding [GO:0006457]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"888186-888288";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"886205-887210";i:10;s:1:"-";i:11;s:16:"HMPREF0421_20716";i:12;s:0:"";i:13;s:16:"HMPREF0421_20716";i:14;s:6:"Operon";i:15;s:6:"763224";i:16;s:33:"HMPREF0421_20715;HMPREF0421_20716";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"895878-896069";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"896120-897569";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:19:"Amino acid permease";i:13;s:16:"HMPREF0421_20724";i:14;s:11:"Single gene";i:15;s:7:"2975257";i:16;s:22:"HMPREF0421_20724(lysP)";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1031412-1031563";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1032335-1034588";i:10;s:1:"+";i:11;s:16:"HMPREF0421_20844";i:12;s:43:"Cobalt ABC transporter; ATP-binding protein";i:13;s:16:"HMPREF0421_20844";i:14;s:11:"Single gene";i:15;s:7:"2975302";i:16;s:16:"HMPREF0421_20844";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014644.1";i:2;s:33:"Gardnerella vaginalis ATCC 14019 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1491064-1491224";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1490737-1490998";i:10;s:1:"-";i:11;s:16:"HMPREF0421_21222";i:12;s:0:"";i:13;s:16:"HMPREF0421_21222";i:14;s:6:"Operon";i:15;s:6:"763341";i:16;s:33:"HMPREF0421_21221;HMPREF0421_21222";i:17;s:0:"";i:18;s:15:"View Structure ";}}
