Genome: Gardnerella vaginalis ATCC 14019 (NC_014644.1); Phylum: Actinobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 241165-241257 (+)TPP241287-242763 (+)thiM

Multifunctional fusion protein [Includes: Thiamine-phosphate synthase (TP synthase) (TPS) (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)]

DOOR ID: 763111
HMPREF0421_20208 (thiM),
HMPREF0421_20209 (theD)
View Structure
2 303654-303757 (+)TPP304889-305096 (+)thiS

Thiamine biosynthesis protein ThiS

DOOR ID: 763120
HMPREF0421_20254 (thiS),
HMPREF0421_20255 (thiG),
HMPREF0421_20256 (thiF)
View Structure
3 626311-626413 (+)TPP626448-627069 (+)HMPREF0421_20504

HMPREF0421_20504Single gene

DOOR ID: 2975159
HMPREF0421_20504 View Structure
4 679496-679597 (+)TPP679885-682498 (+)HMPREF0421_20553

Cobalt transport protein
HMPREF0421_20553Single gene

DOOR ID: 2975188
HMPREF0421_20553 View Structure
5 705075-705178 (+)TPP705213-705816 (+)HMPREF0421_20570

HMPREF0421_20570Single gene

DOOR ID: 2975197
HMPREF0421_20570 View Structure
6 781911-782018 (-)TPP778581-779121 (-)cypB

Peptidyl-prolyl cis-trans isomerase (PPIase)
HMPREF0421_20626Single gene

DOOR ID: 2975219
HMPREF0421_20626 (cypB) View Structure
7 888186-888288 (-)TPP886205-887210 (-)HMPREF0421_20716


DOOR ID: 763224
View Structure
8 895878-896069 (+)lysine896120-897569 (+)lysP

Amino acid permease
HMPREF0421_20724Single gene

DOOR ID: 2975257
HMPREF0421_20724 (lysP) View Structure
9 1031412-1031563 (+)FMN1032335-1034588 (+)HMPREF0421_20844

Cobalt ABC transporter; ATP-binding protein
HMPREF0421_20844Single gene

DOOR ID: 2975302
HMPREF0421_20844 View Structure
10 1491064-1491224 (-)ykoK1490737-1490998 (-)HMPREF0421_21222


DOOR ID: 763341
View Structure