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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
99478-99583
(+)
TPP
99661-100453 (+)
thiM
LPST_C0092
Operon
DOOR ID:
752604
LPST_C0092
(thiM)
,
LPST_C0093
(thiD)
,
LPST_C0094
(thiE)
,
LPST_C0095
View Structure
2
201121-201214
(-)
TPP
200448-201018 (-)
LPST_C0179
LPST_C0179
Operon
DOOR ID:
752621
LPST_C0178,
LPST_C0179
View Structure
3
463768-463813
(+)
PreQ1
463821-464328 (+)
LPST_C0440
LPST_C0440
Single gene
DOOR ID:
2953504
LPST_C0440
View Structure
4
697175-697326
(+)
glmS
697358-699176 (+)
glmS1
LPST_C0643
Single gene
DOOR ID:
2953573
LPST_C0643
(glmS1)
View Structure
5
883540-883721
(+)
lysine
883864-885316 (+)
lysP
LPST_C0809
Operon
DOOR ID:
752744
LPST_C0809
(lysP)
,
LPST_C0810,
LPST_C0811
(dacB)
View Structure
6
1151214-1151319
(+)
SMK_box
1152639-1154142 (+)
LPST_C1055
LPST_C1055
Single gene
DOOR ID:
2953771
LPST_C1055
View Structure
7
1276180-1276310
(+)
FMN
1276468-1277536 (+)
LPST_C1152
LPST_C1152
Operon
DOOR ID:
752803
LPST_C1152,
LPST_C1153,
LPST_C1154
(ribA)
,
LPST_C1155
(ribH)
View Structure
8
1642794-1642915
(-)
FMN
1642115-1642670 (-)
LPST_C1515
LPST_C1515
Single gene
DOOR ID:
2953945
LPST_C1515
View Structure
9
1678089-1678154
(-)
fluoride
1676747-1678037 (-)
eno
LPST_C1543
Operon
DOOR ID:
752888
LPST_C1542
(mntA)
,
LPST_C1543
(eno)
View Structure
10
1797567-1797730
(-)
ykoK
1795803-1797168 (-)
LPST_C1662
LPST_C1662
Operon
DOOR ID:
752916
LPST_C1660,
LPST_C1661,
LPST_C1662
View Structure
11
2377605-2377703
(+)
purine
2377762-2379103 (+)
pucK
LPST_C2226
Single gene
DOOR ID:
2954218
LPST_C2226
(pucK)
View Structure
12
2486554-2486598
(-)
PreQ1
2485552-2486533 (-)
LPST_C2319
LPST_C2319
Operon
DOOR ID:
753040
LPST_C2318,
LPST_C2319
View Structure
13
2940645-2940743
(-)
purine
2938875-2940567 (-)
adeC
LPST_C2740
Single gene
DOOR ID:
2954495
LPST_C2740
(adeC)
View Structure
Genome:
Lactobacillus plantarum subsp. plantarum ST-III
(
NC_014554.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1642794-1642915";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1642115-1642670";i:10;s:1:"-";i:11;s:10:"LPST_C1515";i:12;s:0:"";i:13;s:10:"LPST_C1515";i:14;s:11:"Single gene";i:15;s:7:"2953945";i:16;s:10:"LPST_C1515";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014554.1";i:2;s:48:"Lactobacillus plantarum subsp. plantarum ST-III ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1678089-1678154";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1676747-1678037";i:10;s:1:"-";i:11;s:3:"eno";i:12;s:0:"";i:13;s:10:"LPST_C1543";i:14;s:6:"Operon";i:15;s:6:"752888";i:16;s:32:"LPST_C1542(mntA);LPST_C1543(eno)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014554.1";i:2;s:48:"Lactobacillus plantarum subsp. plantarum ST-III ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1797567-1797730";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1795803-1797168";i:10;s:1:"-";i:11;s:10:"LPST_C1662";i:12;s:0:"";i:13;s:10:"LPST_C1662";i:14;s:6:"Operon";i:15;s:6:"752916";i:16;s:32:"LPST_C1660;LPST_C1661;LPST_C1662";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014554.1";i:2;s:48:"Lactobacillus plantarum subsp. plantarum ST-III ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2377605-2377703";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2377762-2379103";i:10;s:1:"+";i:11;s:4:"pucK";i:12;s:0:"";i:13;s:10:"LPST_C2226";i:14;s:11:"Single gene";i:15;s:7:"2954218";i:16;s:16:"LPST_C2226(pucK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014554.1";i:2;s:48:"Lactobacillus plantarum subsp. plantarum ST-III ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2486554-2486598";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2485552-2486533";i:10;s:1:"-";i:11;s:10:"LPST_C2319";i:12;s:0:"";i:13;s:10:"LPST_C2319";i:14;s:6:"Operon";i:15;s:6:"753040";i:16;s:21:"LPST_C2318;LPST_C2319";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014554.1";i:2;s:48:"Lactobacillus plantarum subsp. plantarum ST-III ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2940645-2940743";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2938875-2940567";i:10;s:1:"-";i:11;s:4:"adeC";i:12;s:0:"";i:13;s:10:"LPST_C2740";i:14;s:11:"Single gene";i:15;s:7:"2954495";i:16;s:16:"LPST_C2740(adeC)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
