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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
431841-432077
(-)
cobalamin
431261-431768 (-)
bpr_I0321
bpr_I0321
Operon
DOOR ID:
737275
bpr_I0320,
bpr_I0321
View Structure
2
720437-720554
(+)
FMN
720655-721438 (+)
bpr_I0566
bpr_I0566
Single gene
DOOR ID:
2919952
bpr_I0566
View Structure
3
881388-881473
(+)
ZMP-ZTP
882320-883526 (+)
bpr_I0732
5-aminoimidazole-4-carboxamide ribonucleotide transformylase
bpr_I0732
Operon
DOOR ID:
737353
bpr_I0731
(purO)
,
bpr_I0732
View Structure
4
1091136-1091221
(+)
c-di-GMP-I
1091527-1092190 (+)
bpr_I0892
Uncharacterized protein
bpr_I0892
operon
DOOR ID:
737382
bpr_I0892,
bpr_I0893
(lepB1)
,
bpr_I0894
View Structure
5
1259549-1259653
(+)
TPP
1259741-1260278 (+)
thiW
Thiazole transporter ThiW
bpr_I1026
Operon
DOOR ID:
737410
bpr_I1026
(thiW)
,
bpr_I1027
(thiM)
,
bpr_I1028
(thiE)
,
bpr_I1029
(thiD)
,
bpr_I1030
(thiC)
View Structure
6
1890768-1890866
(-)
THF
1889578-1889914 (-)
bpr_I1538
Transcriptional regulator PadR family
bpr_I1538
Operon
DOOR ID:
737520
bpr_I1536,
bpr_I1537,
bpr_I1538
View Structure
7
2180425-2180562
(-)
yybP-ykoY
2179010-2180375 (-)
bpr_I1774
Putative manganese efflux pump MntP
bpr_I1774
Single gene
DOOR ID:
2920319
bpr_I1774
View Structure
8
2384434-2384535
(-)
purine
2383038-2384283 (-)
bpr_I1959
Bmp family protein
bpr_I1959
Single gene
DOOR ID:
2920371
bpr_I1959
View Structure
9
2398853-2398928
(+)
c-di-GMP-I
2399047-2400781 (+)
mcpB
Methyl-accepting chemotaxis protein McpB
bpr_I1970
single gene
DOOR ID:
2920376
bpr_I1970
(mcpB)
View Structure
10
2654340-2654442
(-)
TPP
2653523-2654258 (-)
yuaJ
Proton-coupled thiamine transporter YuaJ
bpr_I2163
Single gene
DOOR ID:
2920443
bpr_I2163
(yuaJ)
View Structure
11
2994275-2994446
(-)
lysine
2993193-2994081 (-)
dapA
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
bpr_I2454
Operon
DOOR ID:
737713
bpr_I2452
(hisA)
,
bpr_I2453
(dapB)
,
bpr_I2454
(dapA)
View Structure
12
3326755-3326865
(-)
SAM
3325395-3326586 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
bpr_I2769
Single gene
DOOR ID:
2920604
bpr_I2769
(metK)
View Structure
Genome:
Butyrivibrio proteoclasticus B316
(
NC_014387.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"431841-432077";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"431261-431768";i:10;s:1:"-";i:11;s:9:"bpr_I0321";i:12;s:0:"";i:13;s:9:"bpr_I0321";i:14;s:6:"Operon";i:15;s:6:"737275";i:16;s:19:"bpr_I0320;bpr_I0321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"720437-720554";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"720655-721438";i:10;s:1:"+";i:11;s:9:"bpr_I0566";i:12;s:0:"";i:13;s:9:"bpr_I0566";i:14;s:11:"Single gene";i:15;s:7:"2919952";i:16;s:9:"bpr_I0566";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"881388-881473";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"882320-883526";i:10;s:1:"+";i:11;s:9:"bpr_I0732";i:12;s:61:"5-aminoimidazole-4-carboxamide ribonucleotide transformylase ";i:13;s:9:"bpr_I0732";i:14;s:6:"Operon";i:15;s:6:"737353";i:16;s:25:"bpr_I0731(purO);bpr_I0732";i:17;s:51:"purine nucleotide biosynthetic process [GO:0006164]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1091136-1091221";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1091527-1092190";i:10;s:1:"+";i:11;s:9:"bpr_I0892";i:12;s:23:"Uncharacterized protein";i:13;s:9:"bpr_I0892";i:14;s:6:"operon";i:15;s:6:"737382";i:16;s:36:"bpr_I0892;bpr_I0893(lepB1);bpr_I0894";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1259549-1259653";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1259741-1260278";i:10;s:1:"+";i:11;s:4:"thiW";i:12;s:25:"Thiazole transporter ThiW";i:13;s:9:"bpr_I1026";i:14;s:6:"Operon";i:15;s:6:"737410";i:16;s:79:"bpr_I1026(thiW);bpr_I1027(thiM);bpr_I1028(thiE);bpr_I1029(thiD);bpr_I1030(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1890768-1890866";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1889578-1889914";i:10;s:1:"-";i:11;s:9:"bpr_I1538";i:12;s:37:"Transcriptional regulator PadR family";i:13;s:9:"bpr_I1538";i:14;s:6:"Operon";i:15;s:6:"737520";i:16;s:29:"bpr_I1536;bpr_I1537;bpr_I1538";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2180425-2180562";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2179010-2180375";i:10;s:1:"-";i:11;s:9:"bpr_I1774";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"bpr_I1774";i:14;s:11:"Single gene";i:15;s:7:"2920319";i:16;s:9:"bpr_I1774";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2384434-2384535";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2383038-2384283";i:10;s:1:"-";i:11;s:9:"bpr_I1959";i:12;s:18:"Bmp family protein";i:13;s:9:"bpr_I1959";i:14;s:11:"Single gene";i:15;s:7:"2920371";i:16;s:9:"bpr_I1959";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2398853-2398928";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2399047-2400781";i:10;s:1:"+";i:11;s:4:"mcpB";i:12;s:40:"Methyl-accepting chemotaxis protein McpB";i:13;s:9:"bpr_I1970";i:14;s:11:"single gene";i:15;s:7:"2920376";i:16;s:15:"bpr_I1970(mcpB)";i:17;s:23:"chemotaxis [GO:0006935]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2654340-2654442";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2653523-2654258";i:10;s:1:"-";i:11;s:4:"yuaJ";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:9:"bpr_I2163";i:14;s:11:"Single gene";i:15;s:7:"2920443";i:16;s:15:"bpr_I2163(yuaJ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2994275-2994446";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2993193-2994081";i:10;s:1:"-";i:11;s:4:"dapA";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:9:"bpr_I2454";i:14;s:6:"Operon";i:15;s:6:"737713";i:16;s:47:"bpr_I2452(hisA);bpr_I2453(dapB);bpr_I2454(dapA)";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014387.1";i:2;s:34:"Butyrivibrio proteoclasticus B316 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"3326755-3326865";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3325395-3326586";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"bpr_I2769";i:14;s:11:"Single gene";i:15;s:7:"2920604";i:16;s:15:"bpr_I2769(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}}
