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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
194057-194236
(+)
cobalamin
194307-196182 (+)
EbC_01790
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EbC_01790
Operon
DOOR ID:
720307
EbC_01790,
EbC_01800
(murI)
View Structure
2
314588-314688
(-)
TPP
312564-314499 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EbC_02670
Operon
DOOR ID:
720325
EbC_02650
(thiF)
,
EbC_02660
(thiE)
,
EbC_02670
(thiC)
View Structure
3
356352-356595
(-)
lysine
354901-356254 (-)
lysC
Aspartokinase
EbC_02970
Single gene
DOOR ID:
2888140
EbC_02970
(lysC)
View Structure
4
844714-844820
(-)
TPP
843685-844672 (-)
tbpA
Thiamine-binding periplasmic protein
EbC_07010
Operon
DOOR ID:
720399
EbC_07000
(thiP)
,
EbC_07010
(tbpA)
View Structure
5
1524108-1524238
(+)
MOCO
1525230-1525746 (+)
moaB
Molybdenum cofactor biosynthesis protein B
EbC_13460
Operon
DOOR ID:
720529
EbC_13450
(moaA)
,
EbC_13460
(moaB)
,
EbC_13470
(moaC)
,
EbC_13480
(moaD)
,
EbC_13490
(moaE)
,
EbC_13500
View Structure
6
2051700-2051779
(+)
fluoride
2051974-2054266 (+)
EbC_18110
Type I secretion system ATPase
EbC_18110
Operon
DOOR ID:
720613
EbC_18100,
EbC_18110,
EbC_18120,
EbC_18130,
EbC_18140
View Structure
7
3048652-3048756
(+)
TPP
3048821-3049517 (+)
EbC_27190
Aminopyrimidine aminohydrolase
EbC_27190
Operon
DOOR ID:
720776
EbC_27190,
EbC_27200,
EbC_27210,
EbC_27220
View Structure
8
3316356-3316458
(-)
TPP
3315534-3316320 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EbC_29690
Operon
DOOR ID:
720820
EbC_29680,
EbC_29690
(thiM)
View Structure
9
4305328-4305480
(-)
FMN
4304563-4305220 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EbC_38670
Single gene
DOOR ID:
2889583
EbC_38670
(ribB)
View Structure
Genome:
Erwinia billingiae Eb661
(
NC_014306.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"356352-356595";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"354901-356254";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"EbC_02970";i:14;s:11:"Single gene";i:15;s:7:"2888140";i:16;s:15:"EbC_02970(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"844714-844820";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"843685-844672";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"EbC_07010";i:14;s:6:"Operon";i:15;s:6:"720399";i:16;s:31:"EbC_07000(thiP);EbC_07010(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1524108-1524238";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1525230-1525746";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"EbC_13460";i:14;s:6:"Operon";i:15;s:6:"720529";i:16;s:89:"EbC_13450(moaA);EbC_13460(moaB);EbC_13470(moaC);EbC_13480(moaD);EbC_13490(moaE);EbC_13500";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2051700-2051779";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2051974-2054266";i:10;s:1:"+";i:11;s:9:"EbC_18110";i:12;s:30:"Type I secretion system ATPase";i:13;s:9:"EbC_18110";i:14;s:6:"Operon";i:15;s:6:"720613";i:16;s:49:"EbC_18100;EbC_18110;EbC_18120;EbC_18130;EbC_18140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3048652-3048756";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3048821-3049517";i:10;s:1:"+";i:11;s:9:"EbC_27190";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"EbC_27190";i:14;s:6:"Operon";i:15;s:6:"720776";i:16;s:39:"EbC_27190;EbC_27200;EbC_27210;EbC_27220";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3316356-3316458";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3315534-3316320";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"EbC_29690";i:14;s:6:"Operon";i:15;s:6:"720820";i:16;s:25:"EbC_29680;EbC_29690(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014306.1";i:2;s:25:"Erwinia billingiae Eb661 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4305328-4305480";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4304563-4305220";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"EbC_38670";i:14;s:11:"Single gene";i:15;s:7:"2889583";i:16;s:15:"EbC_38670(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
