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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
127434-127585
(-)
cobalamin
126831-127383 (-)
Trad_0108
Thioesterase superfamily protein
Trad_0108
Operon
DOOR ID:
713553
Trad_0106,
Trad_0107,
Trad_0108
View Structure
2
314588-314730
(-)
FMN
313324-314506 (-)
Trad_0270
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Trad_0270
Operon
DOOR ID:
713587
Trad_0268,
Trad_0269,
Trad_0270
View Structure
3
429615-429749
(-)
cobalamin
428627-429533 (-)
Trad_0383
Periplasmic binding protein
Trad_0383
Single gene
DOOR ID:
2873917
Trad_0383
View Structure
4
736888-737043
(+)
cobalamin
737155-737395 (+)
Trad_0670
Trad_0670
Operon
DOOR ID:
713664
Trad_0670,
Trad_0671
View Structure
5
1552126-1552230
(+)
SAH
1552861-1553944 (+)
Trad_1449
CRISPR-associated protein; Cmr3 family
Trad_1449
Operon
DOOR ID:
713831
Trad_1448,
Trad_1449,
Trad_1450,
Trad_1451
View Structure
6
1678575-1678661
(-)
SAH
1676900-1677863 (-)
Trad_1564
Glycosyl transferase family 2
Trad_1564
Single gene
DOOR ID:
2874324
Trad_1564
View Structure
7
1696664-1696726
(+)
fluoride
1696874-1698542 (+)
Trad_1581
Sodium/hydrogen exchanger
Trad_1581
Single gene
DOOR ID:
2874329
Trad_1581
View Structure
8
1860298-1860398
(-)
TPP
1859346-1860273 (-)
Trad_1725
NMT1/THI5 like domain protein
Trad_1725
Single gene
DOOR ID:
2874385
Trad_1725
View Structure
9
2322277-2322363
(-)
c-di-GMP-II
2319582-2322132 (-)
Trad_2143
Trad_2143
Single gene
DOOR ID:
2874543
Trad_2143
View Structure
10
2449121-2449228
(-)
TPP
2448447-2449023 (-)
Trad_2258
YKOF domain protein
Trad_2258
Operon
DOOR ID:
714007
Trad_2254,
Trad_2255,
Trad_2256,
Trad_2257,
Trad_2258
View Structure
11
2475272-2475391
(-)
SAM
2473781-2475086 (-)
Trad_2279
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Trad_2279
Operon
DOOR ID:
714010
Trad_2278,
Trad_2279
View Structure
12
2829390-2829458
(+)
SAH
2830065-2831157 (+)
Trad_2604
tRNA pseudouridine synthase D (7) (tRNA pseudouridine(13) synthase) (tRNA pseudouridylate synthase D) (tRNA-uridine isomerase D)
Trad_2604
Operon
DOOR ID:
714080
Trad_2603,
Trad_2604
View Structure
13
2887713-2887818
(-)
TPP
2886595-2887657 (-)
Trad_2658
ABC transporter; periplasmic binding protein; thiB subfamily
Trad_2658
Operon
DOOR ID:
714089
Trad_2656,
Trad_2657,
Trad_2658
View Structure
Genome:
Truepera radiovictrix DSM 17093
(
NC_014221.1
);
Phylum:
Deinococcus-Thermus
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Cmr3 family";i:13;s:9:"Trad_1449";i:14;s:6:"Operon";i:15;s:6:"713831";i:16;s:39:"Trad_1448;Trad_1449;Trad_1450;Trad_1451";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1678575-1678661";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1676900-1677863";i:10;s:1:"-";i:11;s:9:"Trad_1564";i:12;s:29:"Glycosyl transferase family 2";i:13;s:9:"Trad_1564";i:14;s:11:"Single gene";i:15;s:7:"2874324";i:16;s:9:"Trad_1564";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1696664-1696726";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1696874-1698542";i:10;s:1:"+";i:11;s:9:"Trad_1581";i:12;s:25:"Sodium/hydrogen exchanger";i:13;s:9:"Trad_1581";i:14;s:11:"Single gene";i:15;s:7:"2874329";i:16;s:9:"Trad_1581";i:17;s:31:"response to stress [GO:0006950]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1860298-1860398";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1859346-1860273";i:10;s:1:"-";i:11;s:9:"Trad_1725";i:12;s:29:"NMT1/THI5 like domain protein";i:13;s:9:"Trad_1725";i:14;s:11:"Single gene";i:15;s:7:"2874385";i:16;s:9:"Trad_1725";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2322277-2322363";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2319582-2322132";i:10;s:1:"-";i:11;s:9:"Trad_2143";i:12;s:0:"";i:13;s:9:"Trad_2143";i:14;s:11:"Single gene";i:15;s:7:"2874543";i:16;s:9:"Trad_2143";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2449121-2449228";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2448447-2449023";i:10;s:1:"-";i:11;s:9:"Trad_2258";i:12;s:19:"YKOF domain protein";i:13;s:9:"Trad_2258";i:14;s:6:"Operon";i:15;s:6:"714007";i:16;s:49:"Trad_2254;Trad_2255;Trad_2256;Trad_2257;Trad_2258";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2475272-2475391";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2473781-2475086";i:10;s:1:"-";i:11;s:9:"Trad_2279";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Trad_2279";i:14;s:6:"Operon";i:15;s:6:"714010";i:16;s:19:"Trad_2278;Trad_2279";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2829390-2829458";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2830065-2831157";i:10;s:1:"+";i:11;s:9:"Trad_2604";i:12;s:128:"tRNA pseudouridine synthase D (7) (tRNA pseudouridine(13) synthase) (tRNA pseudouridylate synthase D) (tRNA-uridine isomerase D)";i:13;s:9:"Trad_2604";i:14;s:6:"Operon";i:15;s:6:"714080";i:16;s:19:"Trad_2603;Trad_2604";i:17;s:41:"tRNA pseudouridine synthesis [GO:0031119]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014221.1";i:2;s:32:"Truepera radiovictrix DSM 17093 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2887713-2887818";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2886595-2887657";i:10;s:1:"-";i:11;s:9:"Trad_2658";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Trad_2658";i:14;s:6:"Operon";i:15;s:6:"714089";i:16;s:29:"Trad_2656;Trad_2657;Trad_2658";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
