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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
118937-119025
(-)
TPP
117582-118848 (-)
LKI_00685
Acetylornithine deacetylase (6)
LKI_00685
Operon
DOOR ID:
697188
LKI_00680,
LKI_00685
View Structure
2
375633-375729
(-)
purine
374289-375462 (-)
LKI_02010
Inosine-5-monophosphate dehydrogenase
LKI_02010
Operon
DOOR ID:
697238
LKI_02000
(guaA)
,
LKI_02005,
LKI_02010
View Structure
3
763408-763505
(+)
TPP
763598-764234 (+)
LKI_04005
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
LKI_04005
Operon
DOOR ID:
697330
LKI_04005,
LKI_04010,
LKI_04015,
LKI_04020
(thiG)
,
LKI_04025,
LKI_04030
View Structure
4
773311-773444
(+)
THF
773486-774068 (+)
LKI_04055
LKI_04055
Single gene
DOOR ID:
2844482
LKI_04055
View Structure
5
803932-804101
(+)
lysine
804178-805291 (+)
LKI_04215
Alanine racemase
LKI_04215
Operon
DOOR ID:
697334
LKI_04200,
LKI_04205,
LKI_04210,
LKI_04215,
LKI_04220,
LKI_04225
View Structure
6
901821-901989
(+)
lysine
902070-903510 (+)
LKI_04685
Lysine transport protein
LKI_04685
Single gene
DOOR ID:
2844530
LKI_04685
View Structure
7
987574-987662
(+)
TPP
987789-988293 (+)
LKI_05090
LKI_05090
Single gene
DOOR ID:
2844554
LKI_05090
View Structure
8
1477570-1477659
(-)
TPP
1476839-1477421 (-)
LKI_07560
ABC transporter subunit (Putative)
LKI_07560
Operon
DOOR ID:
697486
LKI_07545,
LKI_07550,
LKI_07555,
LKI_07560
View Structure
9
1497795-1497897
(+)
SAM
1497992-1499150 (+)
LKI_07665
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
LKI_07665
Operon
DOOR ID:
697491
LKI_07665,
LKI_07670
View Structure
10
1739038-1739145
(+)
TPP
1739255-1739699 (+)
LKI_08785
LKI_08785
Operon
DOOR ID:
697545
LKI_08785,
LKI_08790,
LKI_08795
View Structure
11
1749098-1749275
(+)
lysine
1749359-1750661 (+)
LKI_08845
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LKI_08845
Operon
DOOR ID:
697547
LKI_08845,
LKI_08850,
LKI_08855,
LKI_08860,
LKI_08865
View Structure
12
1778730-1778824
(+)
purine
1778878-1780327 (+)
LKI_08950
Xanthine/uracil permeases family protein
LKI_08950
Single gene
DOOR ID:
2844748
LKI_08950
View Structure
13
1869392-1869527
(+)
FMN
1869593-1870181 (+)
LKI_09430
Riboflavin transporter
LKI_09430
Single gene
DOOR ID:
2844776
LKI_09430
View Structure
14
1971762-1971911
(+)
FMN
1972027-1972276 (+)
LKI_10005
LKI_10005
Operon
DOOR ID:
697598
LKI_10005,
LKI_10010,
LKI_10015,
LKI_10020,
LKI_10025
View Structure
15
1984211-1984258
(+)
PreQ1
1984261-1984738 (+)
LKI_10070
LKI_10070
Operon
DOOR ID:
697602
LKI_10070,
LKI_10075
(fabG)
,
LKI_10080,
LKI_10085
View Structure
Genome:
Leuconostoc kimchii IMSNU 11154
(
NC_014136.1
);
Phylum:
Firmicutes
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"118937-119025";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"117582-118848";i:10;s:1:"-";i:11;s:9:"LKI_00685";i:12;s:31:"Acetylornithine deacetylase (6)";i:13;s:9:"LKI_00685";i:14;s:6:"Operon";i:15;s:6:"697188";i:16;s:19:"LKI_00680;LKI_00685";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"375633-375729";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"374289-375462";i:10;s:1:"-";i:11;s:9:"LKI_02010";i:12;s:37:"Inosine-5-monophosphate dehydrogenase";i:13;s:9:"LKI_02010";i:14;s:6:"Operon";i:15;s:6:"697238";i:16;s:35:"LKI_02000(guaA);LKI_02005;LKI_02010";i:17;s:51:"purine nucleotide biosynthetic process [GO:0006164]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"763408-763505";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"763598-764234";i:10;s:1:"+";i:11;s:9:"LKI_04005";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"LKI_04005";i:14;s:6:"Operon";i:15;s:6:"697330";i:16;s:65:"LKI_04005;LKI_04010;LKI_04015;LKI_04020(thiG);LKI_04025;LKI_04030";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"773311-773444";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"773486-774068";i:10;s:1:"+";i:11;s:9:"LKI_04055";i:12;s:0:"";i:13;s:9:"LKI_04055";i:14;s:11:"Single gene";i:15;s:7:"2844482";i:16;s:9:"LKI_04055";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"803932-804101";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"804178-805291";i:10;s:1:"+";i:11;s:9:"LKI_04215";i:12;s:17:"Alanine racemase ";i:13;s:9:"LKI_04215";i:14;s:6:"Operon";i:15;s:6:"697334";i:16;s:59:"LKI_04200;LKI_04205;LKI_04210;LKI_04215;LKI_04220;LKI_04225";i:17;s:43:"D-alanine biosynthetic process [GO:0030632]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"901821-901989";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"902070-903510";i:10;s:1:"+";i:11;s:9:"LKI_04685";i:12;s:24:"Lysine transport protein";i:13;s:9:"LKI_04685";i:14;s:11:"Single gene";i:15;s:7:"2844530";i:16;s:9:"LKI_04685";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"987574-987662";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"987789-988293";i:10;s:1:"+";i:11;s:9:"LKI_05090";i:12;s:0:"";i:13;s:9:"LKI_05090";i:14;s:11:"Single gene";i:15;s:7:"2844554";i:16;s:9:"LKI_05090";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1477570-1477659";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1476839-1477421";i:10;s:1:"-";i:11;s:9:"LKI_07560";i:12;s:34:"ABC transporter subunit (Putative)";i:13;s:9:"LKI_07560";i:14;s:6:"Operon";i:15;s:6:"697486";i:16;s:39:"LKI_07545;LKI_07550;LKI_07555;LKI_07560";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1497795-1497897";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1497992-1499150";i:10;s:1:"+";i:11;s:9:"LKI_07665";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"LKI_07665";i:14;s:6:"Operon";i:15;s:6:"697491";i:16;s:19:"LKI_07665;LKI_07670";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1739038-1739145";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1739255-1739699";i:10;s:1:"+";i:11;s:9:"LKI_08785";i:12;s:0:"";i:13;s:9:"LKI_08785";i:14;s:6:"Operon";i:15;s:6:"697545";i:16;s:29:"LKI_08785;LKI_08790;LKI_08795";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1749098-1749275";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1749359-1750661";i:10;s:1:"+";i:11;s:9:"LKI_08845";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LKI_08845";i:14;s:6:"Operon";i:15;s:6:"697547";i:16;s:49:"LKI_08845;LKI_08850;LKI_08855;LKI_08860;LKI_08865";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1778730-1778824";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1778878-1780327";i:10;s:1:"+";i:11;s:9:"LKI_08950";i:12;s:40:"Xanthine/uracil permeases family protein";i:13;s:9:"LKI_08950";i:14;s:11:"Single gene";i:15;s:7:"2844748";i:16;s:9:"LKI_08950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1869392-1869527";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1869593-1870181";i:10;s:1:"+";i:11;s:9:"LKI_09430";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LKI_09430";i:14;s:11:"Single gene";i:15;s:7:"2844776";i:16;s:9:"LKI_09430";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1971762-1971911";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1972027-1972276";i:10;s:1:"+";i:11;s:9:"LKI_10005";i:12;s:0:"";i:13;s:9:"LKI_10005";i:14;s:6:"Operon";i:15;s:6:"697598";i:16;s:49:"LKI_10005;LKI_10010;LKI_10015;LKI_10020;LKI_10025";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014136.1";i:2;s:32:"Leuconostoc kimchii IMSNU 11154 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1984211-1984258";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1984261-1984738";i:10;s:1:"+";i:11;s:9:"LKI_10070";i:12;s:0:"";i:13;s:9:"LKI_10070";i:14;s:6:"Operon";i:15;s:6:"697602";i:16;s:45:"LKI_10070;LKI_10075(fabG);LKI_10080;LKI_10085";i:17;s:0:"";i:18;s:15:"View Structure ";}}
