Genome: Bacillus megaterium QM B1551 (NC_014019.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 167550-167722 (+)glmS167772-169575 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BMQ_0198Operon

DOOR ID: 686081		BMQ_0198 (glmS),
BMQ_0199,
BMQ_0200		 View Structure
2 231630-231731 (+)purine231863-233384 (+)BMQ_0271

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BMQ_0271Single gene

DOOR ID: 2821664		BMQ_0271 View Structure
3 233482-233583 (+)purine233717-235043 (+)pbuG

Hypoxanthine/guanine permease		BMQ_0272Single gene

DOOR ID: 2821665		BMQ_0272 (pbuG) View Structure
4 240759-240860 (+)purine240988-241477 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BMQ_0277Operon

DOOR ID: 686094		BMQ_0277 (purE),
BMQ_0278 (purK),
BMQ_0279 (purB),
BMQ_0280 (purC),
BMQ_0281 (purS),
BMQ_0282 (purQ),
BMQ_0283 (purL),
BMQ_0284 (purF),
BMQ_0285 (purM),
BMQ_0286 (purN),
BMQ_0287 (purH),
BMQ_0288 (purD)		 View Structure
5 296826-297009 (+)cobalamin297141-297939 (+)BMQ_0327

Nickel/cobalt efflux system		BMQ_0327Single gene

DOOR ID: 2821683		BMQ_0327 View Structure
6 346016-346117 (-)purine344195-345932 (-)ade

Adenine deaminase (Adenase) (Adenine aminase) 		BMQ_0369Single gene

DOOR ID: 2821714		BMQ_0369 (ade) View Structure
7 365441-365521 (+)glycine365680-367033 (+)BMQ_0390

D-serine/D-alanine/glycine transporter		BMQ_0390Single gene

DOOR ID: 2821727		BMQ_0390 View Structure
8 411577-411691 (-)TPP409693-411463 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BMQ_0448Single gene

DOOR ID: 2821758		BMQ_0448 (thiC) View Structure
9 413620-413759 (+)ydaO-yuaA413865-415125 (+)BMQ_0451

Proton/sodium-glutamate symport protein		BMQ_0451Single gene

DOOR ID: 2821761		BMQ_0451 View Structure
10 465480-465524 (+)PreQ1465533-466022 (+)BMQ_0499

BMQ_0499Single gene

DOOR ID: 2821783		BMQ_0499 View Structure
11 473794-473985 (+)cobalamin474127-475669 (+)BMQ_0509

Putative oligopeptide ABC transporter; oligopetide-binding protein		BMQ_0509Single gene

DOOR ID: 2821789		BMQ_0509 View Structure
12 512325-512426 (+)TPP512547-513171 (+)BMQ_0548

Putative thiamine-phosphate pyrophosphorylase 		BMQ_0548Operon

DOOR ID: 686128		BMQ_0548,
BMQ_0549 (thiO),
BMQ_0550 (thiS),
BMQ_0551 (thiG),
BMQ_0552 (thiF),
BMQ_0553 (thiD)		 View Structure
13 779557-779635 (+)ZMP-ZTP779691-781287 (+)BMQ_0808

Amino acid permease		BMQ_0808Single gene

DOOR ID: 2821923		BMQ_0808 View Structure
14 800124-800225 (+)purine800363-801557 (+)BMQ_0826

Nucleoside permease		BMQ_0826Single gene

DOOR ID: 2821935		BMQ_0826 View Structure
15 863667-863769 (+)TPP863883-865161 (+)BMQ_0884

Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 		BMQ_0884Operon

DOOR ID: 686190		BMQ_0884,
BMQ_0885,
BMQ_0886,
BMQ_0887,
BMQ_0888		 View Structure
16 924678-924777 (+)SAM925020-925650 (-)BMQ_0945

BMQ_0945Operon

DOOR ID: 686203		BMQ_0945,
BMQ_0946		 View Structure
17 960937-961038 (+)purine961543-962872 (+)BMQ_0980

Amidohydrolase (Metal dependent) 		BMQ_0980Single gene

DOOR ID: 2821990		BMQ_0980 View Structure
18 961024-961140 (+)ykkC-yxkD961543-962872 (+)BMQ_0980

Amidohydrolase (Metal dependent) 		BMQ_0980Single gene

DOOR ID: 2821990		BMQ_0980 View Structure
19 1077012-1077098 (-)c-di-GMP-I1076868-1076991 (-)BMQ_1101

Uncharacterized protein		BMQ_1101single gene

DOOR ID: 2822045		BMQ_1101 View Structure
20 1185520-1185621 (+)SAM1186096-1186231 (+)BMQ_1201

BMQ_1201Single gene

DOOR ID: 2822086		BMQ_1201 View Structure
21 1210555-1210649 (+)yybP-ykoY1210746-1211562 (+)BMQ_1223

Integral membrane protein; TerC family		BMQ_1223Single gene

DOOR ID: 2822101		BMQ_1223 View Structure
22 1234073-1234223 (-)SAM1232764-1233937 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BMQ_1247Operon

DOOR ID: 686260		BMQ_1246 (mtnA),
BMQ_1247 (mtnK)		 View Structure
23 1236513-1236619 (+)SAM1236698-1237943 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BMQ_1250Operon

DOOR ID: 686261		BMQ_1250 (mtnW),
BMQ_1251 (mtnX),
BMQ_1252 (mtnB),
BMQ_1253 (mtnD)		 View Structure
24 1262740-1262783 (+)PreQ11263016-1263679 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BMQ_1274Operon

DOOR ID: 686264		BMQ_1274 (queC),
BMQ_1275 (queD),
BMQ_1276 (queE)		 View Structure
25 1280549-1280655 (-)SAM1278602-1280441 (-)yitJ

Homocysteine S-methyltransferase/5;10-methylenetetrahydrofolate reductase (0)		BMQ_1294Operon

DOOR ID: 686269		BMQ_1293 (metH),
BMQ_1294 (yitJ)		 View Structure
26 1282142-1282292 (+)FMN1282335-1282590 (+)BMQ_1296

BMQ_1296Operon

DOOR ID: 686270		BMQ_1296,
BMQ_1297 (ribE),
BMQ_1298 (ribAB),
BMQ_1299 (ribH)		 View Structure
27 1395488-1395605 (+)SAM1395676-1396822 (+)metB

Cystathionine gamma-synthase (9)		BMQ_1415Operon

DOOR ID: 686287		BMQ_1415 (metB),
BMQ_1416 (metC)		 View Structure
28 1427313-1427414 (+)purine1427517-1428111 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BMQ_1450Operon

DOOR ID: 686294		BMQ_1450 (xpt),
BMQ_1451		 View Structure
29 1827140-1827218 (-)ZMP-ZTP1825924-1827091 (-)BMQ_1832

Putative formyltransferase		BMQ_1832Single gene

DOOR ID: 2822452		BMQ_1832 View Structure
30 1998381-1998513 (+)cobalamin1998769-1999729 (+)BMQ_1993

Putative metal ABC transporter; metal-binding protein		BMQ_1993Single gene

DOOR ID: 2822555		BMQ_1993 View Structure
31 2145813-2145911 (-)TPP2145027-2145717 (-)BMQ_2141

Aminopyrimidine aminohydrolase 		BMQ_2141Single gene

DOOR ID: 2822622		BMQ_2141 View Structure
32 2161253-2161361 (+)TPP2161436-2162243 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BMQ_2158Operon

DOOR ID: 686407		BMQ_2158 (thiM),
BMQ_2159 (thiE)		 View Structure
33 2222658-2222764 (+)SAM2222850-2224161 (+)BMQ_2222

Na+/H+ antiporter family		BMQ_2222Single gene

DOOR ID: 2822665		BMQ_2222 View Structure
34 2347554-2347736 (-)lysine2346086-2347415 (-)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BMQ_2347Operon

DOOR ID: 686443		BMQ_2346,
BMQ_2347 (lysA)		 View Structure
35 2420283-2420361 (+)ZMP-ZTP2420529-2421729 (+)BMQ_2421

Putative D-3-phosphoglycerate dehydrogenase (5)		BMQ_2421Operon

DOOR ID: 686456		BMQ_2421,
BMQ_2422		 View Structure
36 2532696-2532796 (-)TPP2530483-2531902 (-)BMQ_2534

Ethanolamine utilization protein EutA 		BMQ_2534Operon

DOOR ID: 686473		BMQ_2531 (eat),
BMQ_2532 (eutC),
BMQ_2533 (eutB),
BMQ_2534		 View Structure
37 2532971-2533155 (+)lysine2533257-2534697 (+)BMQ_2536

Lysine-specific permease		BMQ_2536Single gene

DOOR ID: 2822826		BMQ_2536 View Structure
38 2608081-2608261 (-)cobalamin2607598-2607979 (-)cbiW

Cobalamin biosynthesis protein		BMQ_2620Operon

DOOR ID: 686488		BMQ_2607 (btuR),
BMQ_2608 (cbiY),
BMQ_2609 (cysG),
BMQ_2610 (cbiA),
BMQ_2611 (cbiG),
BMQ_2612 (cbiF),
BMQ_2613 (cbiL),
BMQ_2614 (cbiET),
BMQ_2615 (cbiD),
BMQ_2616 (cbiC),
BMQ_2617 (cbiJ),
BMQ_2618 (cbiX),
BMQ_2619 (cbiH),
BMQ_2620 (cbiW)		 View Structure
39 2608379-2608558 (-)cobalamin2607598-2607979 (-)cbiW

Cobalamin biosynthesis protein		BMQ_2620Operon

DOOR ID: 686488		BMQ_2607 (btuR),
BMQ_2608 (cbiY),
BMQ_2609 (cysG),
BMQ_2610 (cbiA),
BMQ_2611 (cbiG),
BMQ_2612 (cbiF),
BMQ_2613 (cbiL),
BMQ_2614 (cbiET),
BMQ_2615 (cbiD),
BMQ_2616 (cbiC),
BMQ_2617 (cbiJ),
BMQ_2618 (cbiX),
BMQ_2619 (cbiH),
BMQ_2620 (cbiW)		 View Structure
40 2916529-2916709 (-)cobalamin2914910-2916437 (-)cbiP

Cobyric acid synthase		BMQ_2935Single gene

DOOR ID: 2823006		BMQ_2935 (cbiP) View Structure
41 3007257-3007397 (-)ydaO-yuaA3005111-3006779 (-)kdpA

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		BMQ_3028Operon

DOOR ID: 686566		BMQ_3024,
BMQ_3025 (kdpD),
BMQ_3026 (kdpC),
BMQ_3027 (kdpB),
BMQ_3028 (kdpA)		 View Structure
42 3007623-3007765 (-)ydaO-yuaA3005111-3006779 (-)kdpA

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		BMQ_3028Operon

DOOR ID: 686566		BMQ_3024,
BMQ_3025 (kdpD),
BMQ_3026 (kdpC),
BMQ_3027 (kdpB),
BMQ_3028 (kdpA)		 View Structure
43 3432272-3432461 (-)cobalamin3429827-3432122 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BMQ_3536Single gene

DOOR ID: 2823296		BMQ_3536 (metE) View Structure
44 3432541-3432651 (-)SAM3429827-3432122 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BMQ_3536Single gene

DOOR ID: 2823296		BMQ_3536 (metE) View Structure
45 3652482-3652588 (-)SAM3651396-3652473 (-)BMQ_3794

Basic membrane protein		BMQ_3794Operon

DOOR ID: 686700		BMQ_3790,
BMQ_3791,
BMQ_3792,
BMQ_3793,
BMQ_3794		 View Structure
46 3693991-3694094 (-)purine3692955-3693834 (-)BMQ_3842

MTA/SAH nucleosidase 		BMQ_3842Single gene

DOOR ID: 2823465		BMQ_3842 View Structure
47 3749414-3749558 (-)ydaO-yuaA3748629-3749289 (-)ktrA

Potassium uptake protein		BMQ_3904Operon

DOOR ID: 686721		 View Structure
48 3811901-3812002 (-)SAM3811492-3811831 (-)BMQ_3967

BMQ_3967Single gene

DOOR ID: 2823535		BMQ_3967 View Structure
49 3934794-3934935 (-)ydaO-yuaA3932804-3934631 (-)BMQ_4096

Amino acid permease		BMQ_4096Single gene

DOOR ID: 2823602		BMQ_4096 View Structure
50 4208022-4208164 (-)FMN4207291-4207867 (-)fmnP

Riboflavin transporter		BMQ_4364Single gene

DOOR ID: 2823671		BMQ_4364 (fmnP) View Structure
51 4324727-4324819 (-)glycine4323413-4324514 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		BMQ_4485Operon

DOOR ID: 686836		BMQ_4483 (gcvPB),
BMQ_4484 (gcvPA),
BMQ_4485 (gcvT)		 View Structure
52 4550982-4551159 (-)lysine4549607-4550840 (-)lysC

Aspartokinase 		BMQ_4727Single gene

DOOR ID: 2823787		BMQ_4727 (lysC) View Structure
53 4564094-4564245 (-)glutamine4561063-4563427 (-)mutS

Endonuclease MutS2 		BMQ_4737Operon

DOOR ID: 686890		BMQ_4737 (mutS),
BMQ_4738 (polX)		 View Structure
54 4690769-4690886 (-)SAM4689433-4690636 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BMQ_4861Single gene

DOOR ID: 2823857		BMQ_4861 (metK) View Structure
55 4711129-4711315 (-)cobalamin4708752-4710996 (-)nrdE

Ribonucleoside-diphosphate reductase 		BMQ_4886Operon

DOOR ID: 686920		BMQ_4885 (nrdF),
BMQ_4886 (nrdE)		 View Structure
56 4745433-4745535 (-)SAM4744464-4745178 (-)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		BMQ_4932Operon

DOOR ID: 686923		BMQ_4926 (sirC),
BMQ_4927 (sirB),
BMQ_4928 (sirA),
BMQ_4929 (cysC),
BMQ_4930 (sat),
BMQ_4931 (cysP),
BMQ_4932 (cysH)		 View Structure
57 4803746-4803853 (-)SAM4802588-4803614 (-)metN

Methionine import ATP-binding protein MetN 		BMQ_4999Operon

DOOR ID: 686930		BMQ_4997 (metQ),
BMQ_4998 (metP),
BMQ_4999 (metN)		 View Structure