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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
984259-984415
(-)
MOCO
982774-983254 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
XBJ1_0978
Operon
DOOR ID:
668408
XBJ1_0976
(moaE)
,
XBJ1_0977
(moaD)
,
XBJ1_0978
(moaC)
,
XBJ1_0979
(moaA)
View Structure
2
1778111-1778317
(-)
FMN
1777341-1777995 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
XBJ1_1819
Single gene
DOOR ID:
2788591
XBJ1_1819
(ribB)
View Structure
3
2538665-2538865
(+)
yybP-ykoY
2538872-2539457 (+)
yebN
Putative manganese efflux pump MntP
XBJ1_2569
Single gene
DOOR ID:
2788902
XBJ1_2569
(yebN)
View Structure
4
2721087-2721179
(-)
TPP
2719989-2720160 (+)
XBJ1_2738
XBJ1_2738
Single gene
DOOR ID:
2788966
XBJ1_2738
View Structure
5
3471071-3471117
(-)
mini-ykkC
3470728-3471043 (-)
sugE
XBJ1_3562
Single gene
DOOR ID:
2789332
XBJ1_3562
(sugE)
View Structure
6
3585516-3585619
(-)
TPP
3584428-3585442 (-)
tbpA
Thiamin transport protein (ABC superfamily; peri_bind)
XBJ1_3687
Operon
DOOR ID:
668898
XBJ1_3685
(thiQ)
,
XBJ1_3686
(thiP)
,
XBJ1_3687
(tbpA)
View Structure
7
3874599-3874723
(+)
TPP
3874880-3876854 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XBJ1_4028
Operon
DOOR ID:
668966
XBJ1_4028
(thiC)
,
XBJ1_4029
(thiE)
,
XBJ1_4030
(thiF)
,
XBJ1_4031
(thiS)
,
XBJ1_4032
(thiG)
,
XBJ1_4033
(thiH)
View Structure
Genome:
Xenorhabdus bovienii SS-2004
(
NC_013892.1
);
Phylum:
Gammaproteobacteria
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