Genome: Bacillus pseudofirmus OF4 (NC_013791.2); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 176796-176965 (+)glmS177041-178844 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BpOF4_08825Single gene

DOOR ID: 2775338		BpOF4_08825 (glmS) View Structure
2 210747-210855 (+)SAM210997-212011 (+)BpOF4_08995

Methionine import ATP-binding protein MetN 		BpOF4_08995Operon

DOOR ID: 659964		BpOF4_08995,
BpOF4_09000,
BpOF4_09005		 View Structure
3 333724-333825 (+)purine333928-335470 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BpOF4_09595Single gene

DOOR ID: 2775398		BpOF4_09595 (guaA) View Structure
4 335550-335651 (+)purine335762-337064 (+)BpOF4_09600

BpOF4_09600Single gene

DOOR ID: 2775399		BpOF4_09600 View Structure
5 348357-348458 (+)purine348589-349075 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BpOF4_09645Operon

DOOR ID: 659994		BpOF4_09645 (purE),
BpOF4_09650 (purK),
BpOF4_09655 (purB),
BpOF4_09660 (purC),
BpOF4_09665 (purS),
BpOF4_09670 (purQ),
BpOF4_09675 (purL),
BpOF4_09680 (purF),
BpOF4_09685 (purM),
BpOF4_09690 (purN),
BpOF4_09695 (purH),
BpOF4_09700 (purD)		 View Structure
6 385700-385895 (+)cobalamin386082-388254 (+)nrdA

Ribonucleoside-diphosphate reductase 		BpOF4_09830Operon

DOOR ID: 660001		BpOF4_09830 (nrdA),
BpOF4_09835 (nrdB),
BpOF4_09840 (acuA)		 View Structure
7 516385-516488 (+)TPP516551-517115 (+)BpOF4_10400

Putative thiamine transporter		BpOF4_10400Single gene

DOOR ID: 2775450		BpOF4_10400 View Structure
8 657069-657172 (+)SAM657269-658448 (+)BpOF4_11095

Transaminase		BpOF4_11095Single gene

DOOR ID: 2775533		BpOF4_11095 View Structure
9 795565-795679 (+)SAM795762-796980 (+)hom

Homoserine dehydrogenase (HDH) 		BpOF4_11785Single gene

DOOR ID: 2775597		BpOF4_11785 (hom) View Structure
10 854191-854275 (+)c-di-GMP-II854285-855605 (+)BpOF4_12050

Methyl-accepting chemotaxis sensory transducer		BpOF4_12050Operon

DOOR ID: 660085		BpOF4_12050,
BpOF4_12055		 View Structure
11 1063570-1063670 (-)TPP1062168-1063443 (-)argE

Acetylornithine deacetylase		BpOF4_13160Operon

DOOR ID: 660133		BpOF4_13140,
BpOF4_13145,
BpOF4_13150,
BpOF4_13155 (tenA),
BpOF4_13160 (argE)		 View Structure
12 1229180-1229288 (+)TPP1229366-1229984 (+)thiE

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		BpOF4_14025Operon

DOOR ID: 660170		BpOF4_14025 (thiE),
BpOF4_14030,
BpOF4_14035 (thiG),
BpOF4_14040 (thiO),
BpOF4_14045 (thiD)		 View Structure
13 1339342-1339443 (-)purine1338580-1339174 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BpOF4_14605Operon

DOOR ID: 660196		BpOF4_14600,
BpOF4_14605 (xpt)		 View Structure
14 1352388-1352518 (-)SAM1351097-1352312 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BpOF4_14670Operon

DOOR ID: 660200		BpOF4_14665 (mtnA),
BpOF4_14670 (mtnK)		 View Structure
15 1352749-1352852 (+)SAM1352928-1354143 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BpOF4_14675Operon

DOOR ID: 660201		BpOF4_14675 (mtnW),
BpOF4_14680 (mtnX),
BpOF4_14685 (mtnB),
BpOF4_14690		 View Structure
16 1386116-1386290 (+)lysine1386380-1387703 (+)BpOF4_14880

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BpOF4_14880Operon

DOOR ID: 660206		BpOF4_14840 (spoVAA),
BpOF4_14845 (spoVAB),
BpOF4_14850 (spoVAC),
BpOF4_14855 (spoVAD),
BpOF4_14860 (spoVAE),
BpOF4_14865 (spoVAE),
BpOF4_14870 (spoVAF),
BpOF4_14875,
BpOF4_14880		 View Structure
17 1395203-1395405 (+)FMN1395667-1396750 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BpOF4_14925Operon

DOOR ID: 660208		BpOF4_14925 (ribD),
BpOF4_14930 (ribE),
BpOF4_14935 (ribBA),
BpOF4_14940 (ribH)		 View Structure
18 1422903-1423084 (+)cobalamin1423289-1424288 (+)fepB

Ferric ion ABC transpoter (Ferric ion-binding protein)		BpOF4_15090Operon

DOOR ID: 660217		BpOF4_15090 (fepB),
BpOF4_15095 (fepC),
BpOF4_15100 (fepA),
BpOF4_15105 (cobD),
BpOF4_15110,
BpOF4_15115 (cobU),
BpOF4_15120 (cobQ),
BpOF4_15125 (cobS)		 View Structure
19 1461462-1461564 (+)SAM1461651-1462773 (+)metC

Cystathionine gamma-synthase		BpOF4_15295Operon

DOOR ID: 660224		BpOF4_15295 (metC),
BpOF4_15300 (yitJ),
BpOF4_15305 (metH)		 View Structure
20 1581185-1581364 (-)lysine1580168-1581056 (-)dapA

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		BpOF4_15885Single gene

DOOR ID: 2775899		BpOF4_15885 (dapA) View Structure
21 2145456-2145499 (-)PreQ12144593-2145262 (-)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BpOF4_19015Operon

DOOR ID: 660380		BpOF4_18995,
BpOF4_19000 (queF),
BpOF4_19005 (queE),
BpOF4_19010 (queD),
BpOF4_19015 (queC)		 View Structure
22 2603001-2603097 (-)glycine2601716-2602814 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		BpOF4_01675Operon

DOOR ID: 660471		BpOF4_01665 (gcvP2),
BpOF4_01670 (gcvP1),
BpOF4_01675 (gcvT)		 View Structure
23 2794325-2794536 (+)cobalamin2794717-2797003 (+)BpOF4_02645

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BpOF4_02645Operon

DOOR ID: 660511		BpOF4_02645,
BpOF4_02650		 View Structure
24 2799935-2800102 (-)ykoK2798326-2799688 (-)mgtE1

Magnesium transporter MgtE		BpOF4_02660Single gene

DOOR ID: 2774821		BpOF4_02660 (mgtE1) View Structure
25 2833680-2833763 (-)c-di-GMP-II2833123-2833588 (-)BpOF4_02860

Putative Tfp assembly type protein (PilE-like)		BpOF4_02860Single gene

DOOR ID: 2774831		BpOF4_02860 View Structure
26 2896420-2896608 (-)lysine2895025-2896270 (-)lysC

Aspartokinase 		BpOF4_03135Single gene

DOOR ID: 2774844		BpOF4_03135 (lysC) View Structure
27 3115410-3115522 (-)SAM3114043-3115249 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BpOF4_04140Single gene

DOOR ID: 2774946		BpOF4_04140 (metK) View Structure
28 3253010-3253186 (-)lysine3251338-3252886 (-)nhaC2

Putative sodium/proton antiporter NhaC type		BpOF4_04990Single gene

DOOR ID: 2775036		BpOF4_04990 (nhaC2) View Structure
29 3269458-3269570 (-)SAM3268256-3269282 (-)BpOF4_05075

Methionine import ATP-binding protein MetN 		BpOF4_05075Operon

DOOR ID: 660606		BpOF4_05065,
BpOF4_05070,
BpOF4_05075		 View Structure
30 3689274-3689439 (-)ydaO-yuaA3688540-3689206 (-)ktrA

Potassium transport system subunit KtrA		BpOF4_07080Operon

DOOR ID: 660682		 View Structure
31 3765478-3765592 (+)TPP3765733-3767512 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BpOF4_07470Operon

DOOR ID: 660697		BpOF4_07470 (thiC),
BpOF4_07475		 View Structure
32 3775681-3775782 (-)ykkC-yxkD3775245-3775617 (-)smrA2

Small multidrug resistance protein; sugE-like protein		BpOF4_07515Operon

DOOR ID: 660699		BpOF4_07510 (smrA1),
BpOF4_07515 (smrA2)		 View Structure