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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
105442-105554
(-)
TPP
103002-104109 (-)
Gobs_0094
Glycine oxidase ThiO
Gobs_0094
Operon
DOOR ID:
656629
Gobs_0091,
Gobs_0092,
Gobs_0093,
Gobs_0094,
Gobs_0095
View Structure
2
147656-147813
(-)
ydaO-yuaA
146789-147374 (-)
Gobs_0139
Gobs_0139
Single gene
DOOR ID:
2767423
Gobs_0139
View Structure
3
492797-492880
(-)
c-di-GMP-II
491925-492780 (-)
Gobs_0447
Glycosyl transferase family 2
Gobs_0447
Operon
DOOR ID:
656699
Gobs_0445,
Gobs_0446,
Gobs_0447
View Structure
4
594361-594431
(-)
cobalamin
592274-594299 (-)
Gobs_0546
Cobaltochelatase subunit
Gobs_0546
Operon
DOOR ID:
656722
Gobs_0542,
Gobs_0543,
Gobs_0544,
Gobs_0545,
Gobs_0546
View Structure
5
829496-829625
(+)
SAM
829637-830957 (+)
Gobs_0781
Threonine synthase
Gobs_0781
Single gene
DOOR ID:
2767636
Gobs_0781
View Structure
6
2029310-2029479
(-)
ydaO-yuaA
2028727-2029306 (-)
Gobs_1956
Transglycosylase domain protein
Gobs_1956
Single gene
DOOR ID:
2768096
Gobs_1956
View Structure
7
2162093-2162157
(-)
ykkC-III
2161246-2161711 (+)
Gobs_2076
Gobs_2076
operon
DOOR ID:
657021
Gobs_2075,
Gobs_2076
View Structure
8
2241928-2242088
(+)
ydaO-yuaA
2242304-2243153 (+)
Gobs_2155
Gobs_2155
Single gene
DOOR ID:
2768157
Gobs_2155
View Structure
9
2322279-2322391
(+)
SAM-IV
2322438-2323365 (-)
Gobs_2235
Gobs_2235
Single gene
DOOR ID:
2768175
Gobs_2235
View Structure
10
2378871-2378940
(-)
SAH
2374154-2378753 (+)
Gobs_2288
ATPase; P-type (Transporting); HAD superfamily; subfamily IC
Gobs_2288
Single gene
DOOR ID:
2768195
Gobs_2288
View Structure
11
2457868-2457995
(+)
ydaO-yuaA
2457996-2458863 (+)
Gobs_2368
Peptidoglycan-binding lysin domain protein
Gobs_2368
Single gene
DOOR ID:
2768234
Gobs_2368
View Structure
12
2463748-2463900
(+)
ydaO-yuaA
2464178-2465054 (+)
Gobs_2375
Surface antigen
Gobs_2375
Operon
DOOR ID:
657088
Gobs_2375,
Gobs_2376
View Structure
13
2953540-2953722
(-)
ydaO-yuaA
2953037-2953538 (-)
Gobs_2834
Peptidoglycan binding domain-containing protein
Gobs_2834
Single gene
DOOR ID:
2768412
Gobs_2834
View Structure
14
3482299-3482383
(+)
ZMP-ZTP
3482411-3483884 (+)
Gobs_3314
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Gobs_3314
Single gene
DOOR ID:
2768561
Gobs_3314
View Structure
15
3705343-3705509
(-)
ydaO-yuaA
3704110-3705331 (-)
Gobs_3518
Peptidase M23
Gobs_3518
Single gene
DOOR ID:
2768655
Gobs_3518
View Structure
16
5081026-5081167
(-)
ydaO-yuaA
5079958-5081011 (-)
Gobs_4866
NLP/P60 protein
Gobs_4866
Single gene
DOOR ID:
2769074
Gobs_4866
View Structure
17
5116695-5116811
(+)
SAM-IV
5116854-5118147 (+)
Gobs_4904
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Gobs_4904
Operon
DOOR ID:
657600
Gobs_4904,
Gobs_4905
View Structure
18
5273651-5273746
(+)
TPP
5274525-5275185 (+)
Gobs_5050
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Gobs_5050
Operon
DOOR ID:
657628
Gobs_5050,
Gobs_5051
View Structure
Genome:
Geodermatophilus obscurus DSM 43160
(
NC_013757.1
);
Phylum:
Actinobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"105442-105554";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"103002-104109";i:10;s:1:"-";i:11;s:9:"Gobs_0094";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Gobs_0094";i:14;s:6:"Operon";i:15;s:6:"656629";i:16;s:49:"Gobs_0091;Gobs_0092;Gobs_0093;Gobs_0094;Gobs_0095";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"147656-147813";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"146789-147374";i:10;s:1:"-";i:11;s:9:"Gobs_0139";i:12;s:0:"";i:13;s:9:"Gobs_0139";i:14;s:11:"Single gene";i:15;s:7:"2767423";i:16;s:9:"Gobs_0139";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"492797-492880";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"491925-492780";i:10;s:1:"-";i:11;s:9:"Gobs_0447";i:12;s:29:"Glycosyl transferase family 2";i:13;s:9:"Gobs_0447";i:14;s:6:"Operon";i:15;s:6:"656699";i:16;s:29:"Gobs_0445;Gobs_0446;Gobs_0447";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"594361-594431";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"592274-594299";i:10;s:1:"-";i:11;s:9:"Gobs_0546";i:12;s:25:"Cobaltochelatase subunit ";i:13;s:9:"Gobs_0546";i:14;s:6:"Operon";i:15;s:6:"656722";i:16;s:49:"Gobs_0542;Gobs_0543;Gobs_0544;Gobs_0545;Gobs_0546";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"829496-829625";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"829637-830957";i:10;s:1:"+";i:11;s:9:"Gobs_0781";i:12;s:18:"Threonine synthase";i:13;s:9:"Gobs_0781";i:14;s:11:"Single gene";i:15;s:7:"2767636";i:16;s:9:"Gobs_0781";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2029310-2029479";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2028727-2029306";i:10;s:1:"-";i:11;s:9:"Gobs_1956";i:12;s:31:"Transglycosylase domain protein";i:13;s:9:"Gobs_1956";i:14;s:11:"Single gene";i:15;s:7:"2768096";i:16;s:9:"Gobs_1956";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2162093-2162157";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2161246-2161711";i:10;s:1:"+";i:11;s:9:"Gobs_2076";i:12;s:0:"";i:13;s:9:"Gobs_2076";i:14;s:6:"operon";i:15;s:6:"657021";i:16;s:19:"Gobs_2075;Gobs_2076";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2241928-2242088";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2242304-2243153";i:10;s:1:"+";i:11;s:9:"Gobs_2155";i:12;s:0:"";i:13;s:9:"Gobs_2155";i:14;s:11:"Single gene";i:15;s:7:"2768157";i:16;s:9:"Gobs_2155";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2322279-2322391";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2322438-2323365";i:10;s:1:"-";i:11;s:9:"Gobs_2235";i:12;s:0:"";i:13;s:9:"Gobs_2235";i:14;s:11:"Single gene";i:15;s:7:"2768175";i:16;s:9:"Gobs_2235";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2378871-2378940";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2374154-2378753";i:10;s:1:"+";i:11;s:9:"Gobs_2288";i:12;s:61:"ATPase; P-type (Transporting); HAD superfamily; subfamily IC ";i:13;s:9:"Gobs_2288";i:14;s:11:"Single gene";i:15;s:7:"2768195";i:16;s:9:"Gobs_2288";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2457868-2457995";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2457996-2458863";i:10;s:1:"+";i:11;s:9:"Gobs_2368";i:12;s:42:"Peptidoglycan-binding lysin domain protein";i:13;s:9:"Gobs_2368";i:14;s:11:"Single gene";i:15;s:7:"2768234";i:16;s:9:"Gobs_2368";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2463748-2463900";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2464178-2465054";i:10;s:1:"+";i:11;s:9:"Gobs_2375";i:12;s:15:"Surface antigen";i:13;s:9:"Gobs_2375";i:14;s:6:"Operon";i:15;s:6:"657088";i:16;s:19:"Gobs_2375;Gobs_2376";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2953540-2953722";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2953037-2953538";i:10;s:1:"-";i:11;s:9:"Gobs_2834";i:12;s:47:"Peptidoglycan binding domain-containing protein";i:13;s:9:"Gobs_2834";i:14;s:11:"Single gene";i:15;s:7:"2768412";i:16;s:9:"Gobs_2834";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3482299-3482383";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3482411-3483884";i:10;s:1:"+";i:11;s:9:"Gobs_3314";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Gobs_3314";i:14;s:11:"Single gene";i:15;s:7:"2768561";i:16;s:9:"Gobs_3314";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3705343-3705509";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3704110-3705331";i:10;s:1:"-";i:11;s:9:"Gobs_3518";i:12;s:13:"Peptidase M23";i:13;s:9:"Gobs_3518";i:14;s:11:"Single gene";i:15;s:7:"2768655";i:16;s:9:"Gobs_3518";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5081026-5081167";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5079958-5081011";i:10;s:1:"-";i:11;s:9:"Gobs_4866";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Gobs_4866";i:14;s:11:"Single gene";i:15;s:7:"2769074";i:16;s:9:"Gobs_4866";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5116695-5116811";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5116854-5118147";i:10;s:1:"+";i:11;s:9:"Gobs_4904";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Gobs_4904";i:14;s:6:"Operon";i:15;s:6:"657600";i:16;s:19:"Gobs_4904;Gobs_4905";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_013757.1";i:2;s:36:"Geodermatophilus obscurus DSM 43160 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5273651-5273746";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5274525-5275185";i:10;s:1:"+";i:11;s:9:"Gobs_5050";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"Gobs_5050";i:14;s:6:"Operon";i:15;s:6:"657628";i:16;s:19:"Gobs_5050;Gobs_5051";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
