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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
272644-272716
(+)
fluoride
272794-274084 (+)
enoA
Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)
LLKF_0273
Single gene
DOOR ID:
2745510
LLKF_0273
(enoA)
View Structure
2
363747-363846
(-)
TPP
363151-363700 (-)
thiA
Thiamine transporter
LLKF_0371
Single gene
DOOR ID:
2745537
LLKF_0371
(thiA)
View Structure
3
834393-834498
(+)
preQ1-II
835108-835741 (+)
yiaD
NADH-flavin reductase
LLKF_0816
Single gene
DOOR ID:
2745715
LLKF_0816
(yiaD)
View Structure
4
942865-943025
(+)
ykoK
943405-944605 (+)
ftsW
Cell division protein FtsW
LLKF_0913
Operon
DOOR ID:
646523
LLKF_0913
(ftsW)
,
LLKF_0914
(yjaJ)
View Structure
5
1051341-1051457
(+)
FMN
1051638-1052727 (+)
ribG
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
LLKF_1015
Operon
DOOR ID:
646543
LLKF_1015
(ribG)
,
LLKF_1016
(ribB)
,
LLKF_1017
(ribA)
,
LLKF_1018
(ribH)
View Structure
6
1132411-1132485
(+)
fluoride
1132576-1133788 (+)
eriC
Chloride channel protein; ClC family
LLKF_1125
Single gene
DOOR ID:
2745820
LLKF_1125
(eriC)
View Structure
7
1185066-1185163
(+)
purine
1185274-1185868 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
LLKF_1171
Operon
DOOR ID:
646576
LLKF_1171
(xpt)
,
LLKF_1172
(pbuX)
View Structure
8
1378636-1378796
(-)
ykoK
1375645-1378378 (-)
mgtA
Mg(2+) transport ATPase; P-type
LLKF_1322
Single gene
DOOR ID:
2745880
LLKF_1322
(mgtA)
View Structure
9
1385771-1385873
(-)
TPP
1384937-1385690 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
LLKF_1330
Operon
DOOR ID:
646604
LLKF_1328
(thiE)
,
LLKF_1329
(thiD)
,
LLKF_1330
(thiM)
View Structure
10
1397607-1397743
(-)
FMN
1394905-1396723 (-)
ynaD
Multidrug resistance ABC transporter; ATP-binding and permease protein
LLKF_1339
Operon
DOOR ID:
646608
LLKF_1338
(ynaC)
,
LLKF_1339
(ynaD)
View Structure
11
1830974-1831149
(-)
lysine
1829979-1830873 (-)
dapA
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
LLKF_1772
Operon
DOOR ID:
646691
LLKF_1772
(dapA)
,
LLKF_1773,
LLKF_1774
(yqgC)
,
LLKF_1775
(asd)
View Structure
12
1923906-1924075
(-)
ykoK
1922091-1923891 (-)
LLKF_1858
ABC transporter; permease protein
LLKF_1858
Operon
DOOR ID:
646704
LLKF_1856,
LLKF_1857,
LLKF_1858
View Structure
13
2499729-2499911
(+)
lysine
2500014-2501535 (+)
lysP
Lysine-specific permease
LLKF_2438
Single gene
DOOR ID:
2746296
LLKF_2438
(lysP)
View Structure
Genome:
Lactococcus lactis subsp. lactis KF147
(
NC_013656.1
);
Phylum:
Firmicutes
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"272644-272716";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"272794-274084";i:10;s:1:"+";i:11;s:4:"enoA";i:12;s:80:"Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)";i:13;s:9:"LLKF_0273";i:14;s:11:"Single gene";i:15;s:7:"2745510";i:16;s:15:"LLKF_0273(enoA)";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"363747-363846";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"363151-363700";i:10;s:1:"-";i:11;s:4:"thiA";i:12;s:20:"Thiamine transporter";i:13;s:9:"LLKF_0371";i:14;s:11:"Single gene";i:15;s:7:"2745537";i:16;s:15:"LLKF_0371(thiA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"834393-834498";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"835108-835741";i:10;s:1:"+";i:11;s:4:"yiaD";i:12;s:21:"NADH-flavin reductase";i:13;s:9:"LLKF_0816";i:14;s:11:"Single gene";i:15;s:7:"2745715";i:16;s:15:"LLKF_0816(yiaD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"942865-943025";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"943405-944605";i:10;s:1:"+";i:11;s:4:"ftsW";i:12;s:26:"Cell division protein FtsW";i:13;s:9:"LLKF_0913";i:14;s:6:"Operon";i:15;s:6:"646523";i:16;s:31:"LLKF_0913(ftsW);LLKF_0914(yjaJ)";i:17;s:51:"cell cycle [GO:0007049]; cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1051341-1051457";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1051638-1052727";i:10;s:1:"+";i:11;s:4:"ribG";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"LLKF_1015";i:14;s:6:"Operon";i:15;s:6:"646543";i:16;s:63:"LLKF_1015(ribG);LLKF_1016(ribB);LLKF_1017(ribA);LLKF_1018(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1132411-1132485";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1132576-1133788";i:10;s:1:"+";i:11;s:4:"eriC";i:12;s:36:"Chloride channel protein; ClC family";i:13;s:9:"LLKF_1125";i:14;s:11:"Single gene";i:15;s:7:"2745820";i:16;s:15:"LLKF_1125(eriC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1185066-1185163";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1185274-1185868";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"LLKF_1171";i:14;s:6:"Operon";i:15;s:6:"646576";i:16;s:30:"LLKF_1171(xpt);LLKF_1172(pbuX)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1378636-1378796";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1375645-1378378";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:32:"Mg(2+) transport ATPase; P-type ";i:13;s:9:"LLKF_1322";i:14;s:11:"Single gene";i:15;s:7:"2745880";i:16;s:15:"LLKF_1322(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1385771-1385873";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1384937-1385690";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"LLKF_1330";i:14;s:6:"Operon";i:15;s:6:"646604";i:16;s:47:"LLKF_1328(thiE);LLKF_1329(thiD);LLKF_1330(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1397607-1397743";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1394905-1396723";i:10;s:1:"-";i:11;s:4:"ynaD";i:12;s:71:"Multidrug resistance ABC transporter; ATP-binding and permease protein ";i:13;s:9:"LLKF_1339";i:14;s:6:"Operon";i:15;s:6:"646608";i:16;s:31:"LLKF_1338(ynaC);LLKF_1339(ynaD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1830974-1831149";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1829979-1830873";i:10;s:1:"-";i:11;s:4:"dapA";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:9:"LLKF_1772";i:14;s:6:"Operon";i:15;s:6:"646691";i:16;s:56:"LLKF_1772(dapA);LLKF_1773;LLKF_1774(yqgC);LLKF_1775(asd)";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1923906-1924075";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1922091-1923891";i:10;s:1:"-";i:11;s:9:"LLKF_1858";i:12;s:33:"ABC transporter; permease protein";i:13;s:9:"LLKF_1858";i:14;s:6:"Operon";i:15;s:6:"646704";i:16;s:29:"LLKF_1856;LLKF_1857;LLKF_1858";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013656.1";i:2;s:39:"Lactococcus lactis subsp. lactis KF147 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2499729-2499911";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2500014-2501535";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:24:"Lysine-specific permease";i:13;s:9:"LLKF_2438";i:14;s:11:"Single gene";i:15;s:7:"2746296";i:16;s:15:"LLKF_2438(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
