Genome: Paenibacillus sp. Y412MC10 (NC_013406.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 29836-30050 (+)ydaO-yuaA30319-31507 (+)GYMC10_0025

3D domain protein		GYMC10_0025Single gene

DOOR ID: 2704869		GYMC10_0025 View Structure
2 102826-102961 (-)ydaO-yuaA102347-102821 (-)GYMC10_0092

NLP/P60 protein		GYMC10_0092Single gene

DOOR ID: 2704897		GYMC10_0092 View Structure
3 524374-524546 (-)ydaO-yuaA523775-524237 (-)GYMC10_0429

GYMC10_0429Single gene

DOOR ID: 2705042		GYMC10_0429 View Structure
4 525089-525257 (+)ydaO-yuaA525386-525797 (+)GYMC10_0430

GYMC10_0430Operon

DOOR ID: 1184214		GYMC10_0431,
GYMC10_0430		 View Structure
5 723515-723624 (-)TPP722361-723393 (-)GYMC10_0605

NMT1/THI5 like domain protein		GYMC10_0605Single gene

DOOR ID: 2705114		GYMC10_0605 View Structure
6 786779-787012 (-)cobalamin784252-786586 (-)GYMC10_0663

Ribonucleoside-diphosphate reductase 		GYMC10_0663Single gene

DOOR ID: 2705148		GYMC10_0663 View Structure
7 857295-857395 (+)purine857541-858111 (+)GYMC10_0727

Xanthine phosphoribosyltransferase (XPRTase) (2)		GYMC10_0727Operon

DOOR ID: 1184276		GYMC10_0727,
GYMC10_0728		 View Structure
8 1066093-1066191 (+)purine1066249-1066351 (+)GYMC10_0907

GYMC10_0907Operon

DOOR ID: 1184319		GYMC10_0907,
GYMC10_0908		 View Structure
9 1104010-1104111 (+)purine1104303-1104789 (+)GYMC10_0937

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		GYMC10_0937Operon

DOOR ID: 1184325		GYMC10_0937,
GYMC10_0938,
GYMC10_0939		 View Structure
10 1342108-1342211 (+)TPP1342352-1343039 (+)GYMC10_1136

Aminopyrimidine aminohydrolase 		GYMC10_1136Operon

DOOR ID: 1184369		GYMC10_1136,
GYMC10_1137,
GYMC10_1138,
GYMC10_1139 (thiE)		 View Structure
11 1557957-1558123 (+)FMN1558256-1559237 (+)GYMC10_1311

GYMC10_1311Single gene

DOOR ID: 2705422		GYMC10_1311 View Structure
12 1695547-1695578 (-)PreQ11694733-1695411 (-)GYMC10_1427

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		GYMC10_1427Operon

DOOR ID: 1184421		GYMC10_1424,
GYMC10_1425,
GYMC10_1426,
GYMC10_1427		 View Structure
13 2393749-2393950 (+)yybP-ykoY2394110-2394812 (+)GYMC10_2048

Integral membrane protein TerC		GYMC10_2048Single gene

DOOR ID: 2705715		GYMC10_2048 View Structure
14 2493629-2493812 (+)FMN2494071-2495181 (+)GYMC10_2150

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		GYMC10_2150Operon

DOOR ID: 1184574		GYMC10_2150,
GYMC10_2151,
GYMC10_2152		 View Structure
15 2983050-2983133 (-)yybP-ykoY2982108-2982933 (-)GYMC10_2622

Integral membrane protein TerC		GYMC10_2622Single gene

DOOR ID: 2705971		GYMC10_2622 View Structure
16 4166304-4166403 (-)purine4165075-4166239 (-)GYMC10_3613

Major facilitator superfamily MFS_1		GYMC10_3613Single gene

DOOR ID: 2706423		GYMC10_3613 View Structure
17 4197963-4198083 (-)glycine4197401-4197791 (-)GYMC10_3643

Glycine cleavage system H protein (Octanoyl/lipoyl carrier protein)		GYMC10_3643Single gene

DOOR ID: 2706446		GYMC10_3643 View Structure
18 4198270-4198370 (+)glycine4198587-4199700 (+)GYMC10_3644

Aminomethyltransferase (0) (Glycine cleavage system T protein)		GYMC10_3644Operon

DOOR ID: 1184846		GYMC10_3644,
GYMC10_3645,
GYMC10_3646		 View Structure
19 4278298-4278378 (-)ZMP-ZTP4277054-4278215 (-)purT

Formate-dependent phosphoribosylglycinamide formyltransferase (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) (GAR transformylase 2) (GART 2) (Non-folate glycinamide ribonucleotide transformylase) (Phosphoribosylglycinamide formyltransferase 2)		GYMC10_3706Single gene

DOOR ID: 2706474		GYMC10_3706 (purT) View Structure
20 4378898-4378958 (+)fluoride4379029-4380355 (+)GYMC10_3812

Cl-channel voltage-gated family protein		GYMC10_3812Single gene

DOOR ID: 2706513		GYMC10_3812 View Structure
21 4446364-4446443 (-)ZMP-ZTP4445453-4446296 (-)GYMC10_3871

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		GYMC10_3871Single gene

DOOR ID: 2706532		GYMC10_3871 View Structure
22 4501526-4501659 (-)ydaO-yuaA4501045-4501522 (-)GYMC10_3928

NLP/P60 protein		GYMC10_3928Single gene

DOOR ID: 2706553		GYMC10_3928 View Structure
23 4896805-4896907 (+)TPP4896992-4897595 (+)GYMC10_4305

YKOF domain protein		GYMC10_4305Single gene

DOOR ID: 2706695		GYMC10_4305 View Structure
24 5241965-5242064 (-)purine5240458-5241889 (-)GYMC10_4643

GYMC10_4643Single gene

DOOR ID: 2706831		GYMC10_4643 View Structure
25 5775452-5775580 (-)SAM5774402-5775320 (-)GYMC10_5106

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		GYMC10_5106Operon

DOOR ID: 1185145		GYMC10_5104,
GYMC10_5105,
GYMC10_5106		 View Structure
26 5859935-5860138 (-)cobalamin5858674-5859679 (-)GYMC10_5186

Periplasmic binding protein		GYMC10_5186Operon

DOOR ID: 1185160		GYMC10_5181,
GYMC10_5182,
GYMC10_5183,
GYMC10_5184,
GYMC10_5185,
GYMC10_5186		 View Structure
27 6083329-6083441 (-)TPP6082607-6083237 (-)GYMC10_5414

ABC-type thiamin-related transport system; permease component 1; predicted		GYMC10_5414Operon

DOOR ID: 1185206		GYMC10_5412,
GYMC10_5413,
GYMC10_5414		 View Structure
28 6114366-6114510 (-)ydaO-yuaA6112961-6114302 (-)GYMC10_5442

Potassium uptake protein; TrkH family (4)		GYMC10_5442Operon

DOOR ID: 1185211		GYMC10_5441,
GYMC10_5442		 View Structure
29 6135924-6136070 (-)SAM6134799-6135816 (-)GYMC10_5465

Methionine import ATP-binding protein MetN 		GYMC10_5465Operon

DOOR ID: 1185214		GYMC10_5463,
GYMC10_5464,
GYMC10_5465		 View Structure
30 6239561-6239740 (+)lysine6239853-6241305 (+)GYMC10_5573

Amino acid permease-associated region		GYMC10_5573Single gene

DOOR ID: 2707248		GYMC10_5573 View Structure
31 6352724-6352870 (-)ydaO-yuaA6351514-6352570 (-)GYMC10_5669

Ectoine/hydroxyectoine ABC transporter solute-binding protein		GYMC10_5669Operon

DOOR ID: 1185250		GYMC10_5661,
GYMC10_5662,
GYMC10_5663 (ectC),
GYMC10_5664,
GYMC10_5665,
GYMC10_5666,
GYMC10_5667,
GYMC10_5668,
GYMC10_5669		 View Structure
32 6388838-6389039 (-)glmS6386782-6388615 (-)GYMC10_5698

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		GYMC10_5698Single gene

DOOR ID: 2707306		GYMC10_5698 View Structure
33 6639626-6639707 (-)ZMP-ZTP6639046-6639511 (-)GYMC10_5919

Sugar-phosphate isomerase; RpiB/LacA/LacB family 		GYMC10_5919Operon

DOOR ID: 1185303		GYMC10_5918,
GYMC10_5919		 View Structure
34 6691963-6692157 (+)ydaO-yuaA6692323-6694150 (+)GYMC10_5960

GYMC10_5960Single gene

DOOR ID: 2707394		GYMC10_5960 View Structure
35 6764399-6764500 (-)purine6762245-6764048 (-)GYMC10_6021

Adenine deaminase (Adenase) (Adenine aminase) 		GYMC10_6021Single gene

DOOR ID: 2707430		GYMC10_6021 View Structure