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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
505088-505289
(-)
lysine
503600-504968 (-)
Dd703_0462
Aspartokinase
Dd703_0462
Single gene
DOOR ID:
2608873
Dd703_0462
View Structure
2
704455-704563
(-)
TPP
703427-704411 (-)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Dd703_0623
Operon
DOOR ID:
578202
Dd703_0621
(thiQ)
,
Dd703_0622
(thiP)
,
Dd703_0623
(tbpA)
View Structure
3
1243858-1243918
(-)
fluoride
1243407-1243791 (-)
Dd703_1084
Putative fluoride ion transporter CrcB
Dd703_1084
Single gene
DOOR ID:
2609119
Dd703_1084
View Structure
4
2334531-2334625
(-)
glycine
2333889-2334510 (-)
Dd703_1963
Dd703_1963
Single gene
DOOR ID:
2609512
Dd703_1963
View Structure
5
2404756-2404929
(+)
yybP-ykoY
2404942-2405515 (+)
Dd703_2025
Putative manganese efflux pump MntP
Dd703_2025
Single gene
DOOR ID:
2609543
Dd703_2025
View Structure
6
2854342-2854486
(-)
MOCO
2852816-2853329 (-)
Dd703_2434
Molybdenum cofactor biosynthesis protein B
Dd703_2434
Operon
DOOR ID:
578523
Dd703_2431
(moaE)
,
Dd703_2432,
Dd703_2433,
Dd703_2434,
Dd703_2435
(moaA)
View Structure
7
3174148-3174246
(-)
TPP
3173317-3174106 (-)
Dd703_2712
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Dd703_2712
Operon
DOOR ID:
578575
Dd703_2711,
Dd703_2712
View Structure
8
3381498-3381613
(+)
Mg sensor
3381711-3384423 (+)
Dd703_2901
Magnesium-translocating P-type ATPase
Dd703_2901
Single gene
DOOR ID:
2609925
Dd703_2901
View Structure
9
3737783-3737945
(-)
FMN
3737006-3737660 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dd703_3185
Single gene
DOOR ID:
2610030
Dd703_3185
(ribB)
View Structure
10
4305618-4305734
(+)
TPP
4305839-4307792 (+)
Dd703_3715
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dd703_3715
Operon
DOOR ID:
578776
Dd703_3715,
Dd703_3716,
Dd703_3717,
Dd703_3718,
Dd703_3719,
Dd703_3720
(thiH)
View Structure
11
4396258-4396458
(-)
cobalamin
4394342-4396190 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Dd703_3783
Operon
DOOR ID:
578792
Dd703_3782,
Dd703_3783
(btuB)
View Structure
Genome:
Dickeya dadantii Ech703
(
NC_012880.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"505088-505289";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"503600-504968";i:10;s:1:"-";i:11;s:10:"Dd703_0462";i:12;s:14:"Aspartokinase ";i:13;s:10:"Dd703_0462";i:14;s:11:"Single gene";i:15;s:7:"2608873";i:16;s:10:"Dd703_0462";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"704455-704563";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"703427-704411";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Dd703_0623";i:14;s:6:"Operon";i:15;s:6:"578202";i:16;s:50:"Dd703_0621(thiQ);Dd703_0622(thiP);Dd703_0623(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1243858-1243918";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1243407-1243791";i:10;s:1:"-";i:11;s:10:"Dd703_1084";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Dd703_1084";i:14;s:11:"Single gene";i:15;s:7:"2609119";i:16;s:10:"Dd703_1084";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2334531-2334625";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2333889-2334510";i:10;s:1:"-";i:11;s:10:"Dd703_1963";i:12;s:0:"";i:13;s:10:"Dd703_1963";i:14;s:11:"Single gene";i:15;s:7:"2609512";i:16;s:10:"Dd703_1963";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2404756-2404929";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2404942-2405515";i:10;s:1:"+";i:11;s:10:"Dd703_2025";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Dd703_2025";i:14;s:11:"Single gene";i:15;s:7:"2609543";i:16;s:10:"Dd703_2025";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2854342-2854486";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2852816-2853329";i:10;s:1:"-";i:11;s:10:"Dd703_2434";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Dd703_2434";i:14;s:6:"Operon";i:15;s:6:"578523";i:16;s:66:"Dd703_2431(moaE);Dd703_2432;Dd703_2433;Dd703_2434;Dd703_2435(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3174148-3174246";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3173317-3174106";i:10;s:1:"-";i:11;s:10:"Dd703_2712";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Dd703_2712";i:14;s:6:"Operon";i:15;s:6:"578575";i:16;s:21:"Dd703_2711;Dd703_2712";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3381498-3381613";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"3381711-3384423";i:10;s:1:"+";i:11;s:10:"Dd703_2901";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:10:"Dd703_2901";i:14;s:11:"Single gene";i:15;s:7:"2609925";i:16;s:10:"Dd703_2901";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3737783-3737945";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3737006-3737660";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Dd703_3185";i:14;s:11:"Single gene";i:15;s:7:"2610030";i:16;s:16:"Dd703_3185(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4305618-4305734";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4305839-4307792";i:10;s:1:"+";i:11;s:10:"Dd703_3715";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Dd703_3715";i:14;s:6:"Operon";i:15;s:6:"578776";i:16;s:71:"Dd703_3715;Dd703_3716;Dd703_3717;Dd703_3718;Dd703_3719;Dd703_3720(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012880.1";i:2;s:24:"Dickeya dadantii Ech703 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4396258-4396458";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4394342-4396190";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Dd703_3783";i:14;s:6:"Operon";i:15;s:6:"578792";i:16;s:27:"Dd703_3782;Dd703_3783(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
