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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
356935-357066
(-)
TPP
355013-356840 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Arad_7398
Operon
DOOR ID:
524651
Arad_7391
(thiEb)
,
Arad_7393
(thiG)
,
Arad_7394
(thiS)
,
Arad_7396
(thiO)
,
Arad_7398
(thiC)
View Structure
2
1100500-1100727
(-)
cobalamin
1100030-1100297 (-)
nrdH
Glutaredoxin protein
Arad_8253
Operon
DOOR ID:
524776
Arad_8249
(nrdF)
,
Arad_8250,
Arad_8252
(nrdI)
,
Arad_8253
(nrdH)
View Structure
3
1111126-1111190
(+)
SAH
1111894-1112677 (-)
Arad_8266
Peptide ABC transporter
Arad_8266
Operon
DOOR ID:
524779
Arad_8261,
Arad_8263,
Arad_8264,
Arad_8265
(dppCch1)
,
Arad_8266
View Structure
4
1570944-1571179
(+)
cobalamin
1571362-1572394 (+)
Arad_8811
Iron ABC transporter
Arad_8811
Operon
DOOR ID:
524856
Arad_8811,
Arad_8812,
Arad_8813,
Arad_8815
View Structure
5
1921879-1921974
(+)
TPP
1922024-1922831 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Arad_9219
Operon
DOOR ID:
524923
Arad_9219
(thiM)
,
Arad_9220
(thiEe)
,
Arad_9221
(thiD)
,
Arad_9222
View Structure
6
2633328-2633438
(+)
ykkC-yxkD
2633513-2634587 (+)
Arad_10031
ABC transporter
Arad_10031
Operon
DOOR ID:
525046
Arad_10031,
Arad_10032,
Arad_10034,
Arad_10035,
Arad_10036
View Structure
7
2636221-2636270
(+)
mini-ykkC
2636292-2637111 (+)
Arad_10035
Arad_10035
Operon
DOOR ID:
525046
Arad_10031,
Arad_10032,
Arad_10034,
Arad_10035,
Arad_10036
View Structure
Genome:
Agrobacterium radiobacter K84 chromosome II
(
NC_011983.1
);
Phylum:
Alphaproteobacteria
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