Genome: Bacillus cereus Q1 (NC_011969.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 157351-157506 (+)glmS157697-159500 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BCQ_0183Single gene

DOOR ID: 2493425		BCQ_0183 (glmS) View Structure
2 176982-177096 (-)SAM176082-176895 (-)BCQ_0198

Lipoprotein		BCQ_0198Operon

DOOR ID: 522264		BCQ_0196,
BCQ_0197,
BCQ_0198		 View Structure
3 185915-186020 (+)SAM186182-187073 (+)BCQ_0208

Oligopeptide ABC transporter; permease protein		BCQ_0208Operon

DOOR ID: 522266		BCQ_0208,
BCQ_0209 (oppC),
BCQ_0210 (oppD),
BCQ_0211 (oppF),
BCQ_0212 (oppA)		 View Structure
4 198907-199013 (-)SAM197133-198774 (-)oppA

Bacterial extracellular solute-binding protein; family 5 (SBP_bac_5)		BCQ_0218Single gene

DOOR ID: 2493444		BCQ_0218 (oppA) View Structure
5 266267-266368 (+)purine266523-268071 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BCQ_0299Single gene

DOOR ID: 2493480		BCQ_0299 (guaA) View Structure
6 268226-268327 (+)purine268455-269781 (+)BCQ_0300

Xanthine/uracil permease family protein		BCQ_0300Single gene

DOOR ID: 2493481		BCQ_0300 View Structure
7 315654-315755 (+)purine315865-316351 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BCQ_0340Operon

DOOR ID: 522283		BCQ_0340 (purE),
BCQ_0341 (purK),
BCQ_0342 (purB),
BCQ_0343 (purC),
BCQ_0344 (purS),
BCQ_0345 (purQ),
BCQ_0346 (purL),
BCQ_0347 (purF),
BCQ_0348 (purM),
BCQ_0349 (purN),
BCQ_0350 (purH)		 View Structure
8 340943-341049 (+)SAM341172-342192 (+)BCQ_0363

Methionine import ATP-binding protein MetN 		BCQ_0363Operon

DOOR ID: 522287		BCQ_0363,
BCQ_0364,
BCQ_0365		 View Structure
9 362557-362658 (-)purine361158-362355 (-)nupC

Nucleoside transporter		BCQ_0382Single gene

DOOR ID: 2493506		BCQ_0382 (nupC) View Structure
10 421441-421553 (-)SAM420721-421354 (-)BCQ_0432

Metal-dependent hydrolase		BCQ_0432Single gene

DOOR ID: 2493529		BCQ_0432 View Structure
11 458747-458856 (+)TPP458928-459735 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BCQ_0461Operon

DOOR ID: 522307		BCQ_0461 (thiM),
BCQ_0462 (thiE)		 View Structure
12 463082-463166 (+)c-di-GMP-I463307-465047 (+)cheW

Methyl-accepting chemotaxis protein		BCQ_0465single gene

DOOR ID: 2493547		BCQ_0465 (cheW) View Structure
13 465109-465210 (+)TPP465310-465631 (+)BCQ_0466

BCQ_0466Operon

DOOR ID: 522308		BCQ_0466,
BCQ_0467,
BCQ_0468		 View Structure
14 805327-805439 (+)TPP805684-806380 (+)tenA

Aminopyrimidine aminohydrolase 		BCQ_0816Operon

DOOR ID: 522365		BCQ_0816 (tenA),
BCQ_0817,
BCQ_0818,
BCQ_0819,
BCQ_0820 (tenI),
BCQ_0821 (goxB),
BCQ_0822 (thiS),
BCQ_0823 (thiG),
BCQ_0824 (thiF),
BCQ_0825 (thiD)		 View Structure
15 805500-805602 (+)TPP805684-806380 (+)tenA

Aminopyrimidine aminohydrolase 		BCQ_0816Operon

DOOR ID: 522365		BCQ_0816 (tenA),
BCQ_0817,
BCQ_0818,
BCQ_0819,
BCQ_0820 (tenI),
BCQ_0821 (goxB),
BCQ_0822 (thiS),
BCQ_0823 (thiG),
BCQ_0824 (thiF),
BCQ_0825 (thiD)		 View Structure
16 813499-813646 (+)ydaO-yuaA813739-814126 (+)BCQ_0826

BCQ_0826Single gene

DOOR ID: 2493697		BCQ_0826 View Structure
17 814635-814780 (+)ydaO-yuaA814878-814983 (+)BCQ_0828

BCQ_0828Single gene

DOOR ID: 2493699		BCQ_0828 View Structure
18 831110-831215 (-)SAM829908-831021 (-)rbsB

Ribose ABC transporter; ribose-binding protein		BCQ_0843Operon

DOOR ID: 522368		BCQ_0841 (rbsC),
BCQ_0842 (rbsA),
BCQ_0843 (rbsB)		 View Structure
19 911027-911210 (-)lysine909454-910879 (-)arcD

Arginine/ornithine antiporter		BCQ_0931Operon

DOOR ID: 522389		BCQ_0930,
BCQ_0931 (arcD)		 View Structure
20 1373224-1373388 (-)yybP-ykoY1372337-1373132 (-)BCQ_1382

BCQ_1382Single gene

DOOR ID: 2493990		BCQ_1382 View Structure
21 1403009-1403052 (+)PreQ11403145-1403808 (+)BCQ_1413

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BCQ_1413Operon

DOOR ID: 522471		BCQ_1413,
BCQ_1414 (ygcM),
BCQ_1415,
BCQ_1416 (folE)		 View Structure
22 1465562-1465743 (+)lysine1465923-1467240 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BCQ_1492Single gene

DOOR ID: 2494050		BCQ_1492 (lysA) View Structure
23 1467358-1467466 (+)SAM1467538-1467682 (+)BCQ_1493

BCQ_1493Single gene

DOOR ID: 2494051		BCQ_1493 View Structure
24 1480126-1480231 (+)SAM1481870-1482227 (+)yvqI

BCQ_1508Operon

DOOR ID: 522482		BCQ_1508 (yvqI),
BCQ_1509		 View Structure
25 1526752-1526891 (+)FMN1527053-1527632 (+)ypaA

Riboflavin transporter		BCQ_1551Single gene

DOOR ID: 2494083		BCQ_1551 (ypaA) View Structure
26 1600372-1600473 (+)purine1600580-1601174 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BCQ_1635Operon

DOOR ID: 522507		BCQ_1635 (xpt),
BCQ_1636 (pbuX)		 View Structure
27 1613023-1613186 (+)ykoK1613531-1614257 (+)BCQ_1646

Cation transporter; putative		BCQ_1646Single gene

DOOR ID: 2494118		BCQ_1646 View Structure
28 1639438-1639482 (+)PreQ11639488-1639974 (+)BCQ_1657

BCQ_1657Single gene

DOOR ID: 2494126		BCQ_1657 View Structure
29 1791543-1791729 (-)lysine1790113-1791343 (-)dapG

Aspartokinase 		BCQ_1820Single gene

DOOR ID: 2494192		BCQ_1820 (dapG) View Structure
30 1856798-1856944 (+)ydaO-yuaA1857088-1858915 (+)ydaO

YdaO		BCQ_1879Single gene

DOOR ID: 2494232		BCQ_1879 (ydaO) View Structure
31 1878395-1878500 (+)SAM1878607-1879837 (+)BCQ_1898

Multidrug resistance protein possible tetracycline resistance determinant		BCQ_1898Single gene

DOOR ID: 2494244		BCQ_1898 View Structure
32 2276336-2276455 (-)glycine2274860-2276228 (-)BCQ_2307

Sodium/alanine symporter family protein		BCQ_2307Single gene

DOOR ID: 2494462		BCQ_2307 View Structure
33 2448816-2448921 (+)TPP2449044-2449734 (+)tenA

Aminopyrimidine aminohydrolase 		BCQ_2485Single gene

DOOR ID: 2494568		BCQ_2485 (tenA) View Structure
34 2469181-2469296 (+)SAM2469434-2469983 (+)BCQ_2505

BCQ_2505Operon

DOOR ID: 522654		BCQ_2505,
BCQ_2506,
BCQ_2507 (cbiQ)		 View Structure
35 2821773-2821965 (+)lysine2822077-2823544 (+)lysP

Lysine specific permease		BCQ_2886Operon

DOOR ID: 522727		BCQ_2886 (lysP),
BCQ_2887,
BCQ_2888		 View Structure
36 2978997-2979098 (-)SAM2977702-2978908 (-)amaA

Peptidase M20 domain-containing protein 2		BCQ_3026Single gene

DOOR ID: 2494837		BCQ_3026 (amaA) View Structure
37 3067452-3067550 (-)SAM3067093-3067351 (-)BCQ_3110

BCQ_3110Single gene

DOOR ID: 2494889		BCQ_3110 View Structure
38 3109060-3109202 (+)ydaO-yuaA3109515-3112029 (-)BCQ_3159

Collagen-like triple helix repeat protein		BCQ_3159Operon

DOOR ID: 522771		BCQ_3159,
BCQ_3160		 View Structure
39 3266612-3266718 (-)SAM3265873-3266542 (-)BCQ_3323

Amino acid ABC transproter; permease protein		BCQ_3323Operon

DOOR ID: 522805		BCQ_3320,
BCQ_3321,
BCQ_3322 (glnQ),
BCQ_3323		 View Structure
40 3537231-3537332 (-)purine3536271-3536997 (-)BCQ_3579

Transcriptional regulator; GntR family		BCQ_3579Single gene

DOOR ID: 2495139		BCQ_3579 View Structure
41 3748541-3748729 (+)cobalamin3748856-3751145 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BCQ_3791Single gene

DOOR ID: 2495216		BCQ_3791 (metE) View Structure
42 3779349-3779490 (-)SAM3778075-3779257 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BCQ_3823Operon

DOOR ID: 522902		BCQ_3822 (mtnA),
BCQ_3823 (mtnK)		 View Structure
43 3781684-3781789 (+)SAM3781853-3783098 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BCQ_3826Operon

DOOR ID: 522903		BCQ_3826 (mtnW),
BCQ_3827 (mtnX),
BCQ_3828 (mtnB),
BCQ_3829		 View Structure
44 3843469-3843612 (+)FMN3843923-3845036 (+)BCQ_3899

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BCQ_3899Operon

DOOR ID: 522914		BCQ_3899,
BCQ_3900 (ribE),
BCQ_3901 (ribBA),
BCQ_3902 (ribH)		 View Structure
45 3961867-3961976 (-)SAM3959962-3961795 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase		BCQ_4039Operon

DOOR ID: 522937		BCQ_4036,
BCQ_4037 (murG),
BCQ_4038 (metH),
BCQ_4039 (metE)		 View Structure
46 3962180-3962289 (+)SAM3962382-3963495 (+)metC

Cystathionine beta-lyase		BCQ_4041Operon

DOOR ID: 522938		BCQ_4040,
BCQ_4041 (metC),
BCQ_4042 (metC)		 View Structure
47 4481313-4481434 (-)SAM4479943-4481143 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BCQ_4582Single gene

DOOR ID: 2495568		BCQ_4582 (metK) View Structure
48 4519596-4519697 (+)TPP4519784-4520453 (+)BCQ_4624

BCQ_4624Single gene

DOOR ID: 2495596		BCQ_4624 View Structure
49 4673912-4674019 (-)SAM4672706-4673732 (-)BCQ_4804

Methionine import ATP-binding protein MetN 		BCQ_4804Operon

DOOR ID: 523091		BCQ_4803,
BCQ_4804		 View Structure
50 4763720-4763779 (+)fluoride4763824-4764238 (+)crcB

Putative fluoride ion transporter CrcB		BCQ_4894Operon

DOOR ID: 523112		BCQ_4894 (crcB),
BCQ_4895		 View Structure
51 4919872-4919987 (-)TPP4917997-4919758 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BCQ_5055Single gene

DOOR ID: 2495778		BCQ_5055 (thiC) View Structure
52 5120898-5121002 (-)SAM5119507-5120806 (-)BCQ_5248

O-acetylhomoserine/O-acetylserine sulfhydrylase		BCQ_5248Operon

DOOR ID: 523184		BCQ_5247 (metA),
BCQ_5248		 View Structure