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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1396290-1396503
(+)
cobalamin
1396607-1397399 (+)
Mnod_1320
Methyltransferase type 11
Mnod_1320
Operon
DOOR ID:
516267
Mnod_1320,
Mnod_1321,
Mnod_1322,
Mnod_1323,
Mnod_1324
View Structure
2
1491833-1492027
(-)
cobalamin
1489456-1491574 (-)
Mnod_1407
TonB-dependent siderophore receptor
Mnod_1407
Operon
DOOR ID:
516282
Mnod_1406,
Mnod_1407
View Structure
3
2254142-2254341
(+)
cobalamin
2254371-2254548 (+)
Mnod_2145
Cobalt transporter; subunit CbtB
Mnod_2145
Single gene
DOOR ID:
2482272
Mnod_2145
View Structure
4
3239979-3240187
(+)
cobalamin
3240314-3242519 (+)
Mnod_3135
TonB-dependent siderophore receptor
Mnod_3135
Operon
DOOR ID:
516551
Mnod_3135,
Mnod_3136,
Mnod_3137,
Mnod_3138
View Structure
5
4584275-4584382
(+)
TPP
4584439-4586323 (+)
Mnod_4530
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Mnod_4530
Single gene
DOOR ID:
2483295
Mnod_4530
View Structure
6
4653669-4653735
(-)
SAH
4652441-4653185 (-)
Mnod_4592
Acetoacetate decarboxylase
Mnod_4592
Operon
DOOR ID:
516768
Mnod_4591,
Mnod_4592,
Mnod_4593
View Structure
7
6138778-6138880
(-)
glycine
6137584-6138727 (-)
Mnod_6035
Glycine cleavage system T protein
Mnod_6035
Operon
DOOR ID:
517006
Mnod_6033,
Mnod_6034,
Mnod_6035
View Structure
8
7608745-7608875
(-)
TPP
7607465-7608674 (-)
Mnod_7518
Glycine oxidase ThiO
Mnod_7518
Operon
DOOR ID:
517247
Mnod_7517,
Mnod_7518
View Structure
Genome:
Methylobacterium nodulans ORS 2060
(
NC_011894.1
);
Phylum:
Alphaproteobacteria
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