Genome: Clostridium botulinum B str. Eklund 17B (NC_010674.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 113421-113595 (+)lysine113900-115619 (+)CLL_A0102

Na+/H+ antiporter family protein		CLL_A0102Single gene

DOOR ID: 2310519		CLL_A0102 View Structure
2 136470-136573 (-)TPP135665-136343 (-)CLL_A0123

Probable proton-coupled thiamine transporter YuaJ		CLL_A0123Single gene

DOOR ID: 2310544		CLL_A0123 View Structure
3 338281-338429 (+)glmS338547-340374 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLL_A0338Operon

DOOR ID: 432466		CLL_A0338 (glmS),
CLL_A0339		 View Structure
4 350121-350227 (+)SAM350356-351622 (+)CLL_A0347

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein		CLL_A0347Single gene

DOOR ID: 2310927		CLL_A0347 View Structure
5 396416-396513 (+)purine396652-398107 (+)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLL_A0388Operon

DOOR ID: 432477		CLL_A0388 (guaB),
CLL_A0389 (guaA)		 View Structure
6 507110-507211 (+)SAM507332-508508 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLL_A0515Single gene

DOOR ID: 2311208		CLL_A0515 (metK) View Structure
7 525184-525301 (+)FMN525574-526165 (+)CLL_A0529

Riboflavin transporter		CLL_A0529Single gene

DOOR ID: 2310442		CLL_A0529 View Structure
8 655625-655811 (+)cobalamin655941-656688 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CLL_A0654Operon

DOOR ID: 432530		CLL_A0654 (cbiM),
CLL_A0655		 View Structure
9 749334-749442 (+)SAM749632-750598 (+)CLL_A0743

Methionine import ATP-binding protein MetN 		CLL_A0743Operon

DOOR ID: 432550		CLL_A0743,
CLL_A0744,
CLL_A0745		 View Structure
10 856609-856691 (+)c-di-GMP-I857208-857610 (+)flgB

Flagellar basal body rod protein FlgB		CLL_A0837operon

DOOR ID: 432574		CLL_A0837 (flgB),
CLL_A0838 (flgC),
CLL_A0839 (fliE),
CLL_A0840 (fliF),
CLL_A0841 (fliG),
CLL_A0842,
CLL_A0843 (fliI),
CLL_A0844 (fliJ),
CLL_A0845,
CLL_A0846,
CLL_A0847,
CLL_A0848		 View Structure
11 1237127-1237228 (+)purine1237310-1238678 (+)CLL_A1208

Inner membrane protein YicO		CLL_A1208Single gene

DOOR ID: 2311091		CLL_A1208 View Structure
12 1328403-1328518 (+)FMN1328883-1330020 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLL_A1295Operon

DOOR ID: 432650		CLL_A1295 (ribD),
CLL_A1296 (ribE)		 View Structure
13 1433573-1433672 (+)purine1433741-1435487 (+)ade

Adenine deaminase (Adenase) (Adenine aminase) 		CLL_A1394Single gene

DOOR ID: 2310691		CLL_A1394 (ade) View Structure
14 1441409-1441496 (+)glycine1442035-1443418 (+)CLL_A1399

D-serine/D-alanine/glycine transporter		CLL_A1399Single gene

DOOR ID: 2310578		CLL_A1399 View Structure
15 1444518-1444696 (+)cobalamin1444779-1444917 (-)CLL_A1401

CLL_A1401Single gene

DOOR ID: 2310821		CLL_A1401 View Structure
16 1460757-1460866 (+)TPP1460959-1461586 (+)CLL_A1416

Thiamine transporter protein		CLL_A1416Operon

DOOR ID: 432675		CLL_A1416,
CLL_A1417		 View Structure
17 1473093-1473254 (+)ykoK1473716-1476416 (+)mgtA

Magnesium-importing ATPase 		CLL_A1427Single gene

DOOR ID: 2310817		CLL_A1427 (mgtA) View Structure
18 1516712-1516813 (+)purine1517009-1518404 (+)CLL_A1469

Xanthine/uracil permease family protein		CLL_A1469Single gene

DOOR ID: 2310810		CLL_A1469 View Structure
19 1566915-1567006 (+)Nico1567133-1569659 (+)CLL_A1510

Cation-transporting ATPase PacL 		CLL_A1510Single gene

DOOR ID: 2310869		CLL_A1510 View Structure
20 1616893-1617008 (-)yybP-ykoY1615735-1616695 (-)CLL_A1561

Sodium/calcium exchanger protein		CLL_A1561Single gene

DOOR ID: 2310497		CLL_A1561 View Structure
21 1764762-1764863 (+)purine1764998-1766363 (+)CLL_A1696

Xanthine permease		CLL_A1696Operon

DOOR ID: 432737		CLL_A1696,
CLL_A1697 (xpt)		 View Structure
22 1777915-1778010 (+)purine1778682-1779897 (+)tyrS

Tyrosine--tRNA ligase (Tyrosyl-tRNA synthetase) (TyrRS)		CLL_A1702Operon

DOOR ID: 432739		CLL_A1702 (tyrS),
CLL_A1703,
CLL_A1704		 View Structure
23 1843214-1843354 (+)SAM1843531-1844839 (+)CLL_A1758

Na+/H+ antiporter		CLL_A1758Single gene

DOOR ID: 2310523		CLL_A1758 View Structure
24 1883244-1883353 (+)TPP1883411-1884614 (+)cytX

Probable hydroxymethylpyrimidine transporter CytX		CLL_A1800Operon

DOOR ID: 432755		CLL_A1800 (cytX),
CLL_A1801,
CLL_A1802,
CLL_A1803,
CLL_A1804 (cmk),
CLL_A1805,
CLL_A1806,
CLL_A1807		 View Structure
25 2563794-2563878 (-)c-di-GMP-I2561778-2563539 (-)CLL_A2471

Chitinase B		CLL_A2471single gene

DOOR ID: 2310641		CLL_A2471 View Structure
26 2720217-2720276 (+)fluoride2720424-2721798 (+)CLL_A2611

Voltage-gated chloride channel		CLL_A2611Single gene

DOOR ID: 2310468		CLL_A2611 View Structure
27 2727962-2728060 (-)purine2726437-2727778 (-)CLL_A2616

Inner membrane protein YicO		CLL_A2616Single gene

DOOR ID: 2311149		CLL_A2616 View Structure
28 2931840-2931946 (-)SAM2930726-2931614 (-)metF

Methylenetetrahydrofolate reductase (0)		CLL_A2856Operon

DOOR ID: 432955		CLL_A2853,
CLL_A2854,
CLL_A2855 (luxS),
CLL_A2856 (metF)		 View Structure
29 3021400-3021658 (-)cobalamin3020214-3021051 (-)CLL_A2939

Sirohydrochlorin cobaltochelatase 		CLL_A2939Single gene

DOOR ID: 2311089		CLL_A2939 View Structure
30 3050222-3050320 (-)THF3049616-3050162 (-)CLL_A2964

CLL_A2964Single gene

DOOR ID: 2310396		CLL_A2964 View Structure
31 3123157-3123202 (-)PreQ13121757-3122738 (-)CLL_A3021

Nucleoside hydrolase; IUNH family		CLL_A3021Operon

DOOR ID: 432992		CLL_A3019,
CLL_A3020,
CLL_A3021		 View Structure
32 3215293-3215404 (-)TPP3214687-3215215 (-)thiW

Putative ThiW protein		CLL_A3107Operon

DOOR ID: 433010		CLL_A3106 (thiD),
CLL_A3107 (thiW)		 View Structure
33 3268305-3268396 (-)c-di-GMP-I3268033-3268192 (-)CLL_A3152

Uncharacterized protein		CLL_A3152operon

DOOR ID: 433020		CLL_A3150,
CLL_A3151,
CLL_A3152		 View Structure
34 3451380-3451550 (-)lysine3449872-3451168 (-)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		CLL_A3286Single gene

DOOR ID: 2311120		CLL_A3286 (lysA) View Structure
35 3473965-3474048 (-)c-di-GMP-II3472990-3473749 (-)CLL_A3303

Leader peptidase		CLL_A3303Operon

DOOR ID: 433048		CLL_A3301,
CLL_A3302,
CLL_A3303		 View Structure
36 3677762-3677929 (-)lysine3676752-3677625 (-)dapA

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		CLL_A3477Single gene

DOOR ID: 2311280		CLL_A3477 (dapA) View Structure