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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77201-77300
(-)
TPP
76186-77170 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
EcE24377A_0070
Operon
DOOR ID:
352473
EcE24377A_0068
(thiQ)
,
EcE24377A_0069
(thiP)
,
EcE24377A_0070
(tbpA)
View Structure
2
865089-865233
(+)
MOCO
866231-866744 (+)
moaB
Molybdenum cofactor biosynthesis protein B
EcE24377A_0845
Operon
DOOR ID:
352637
EcE24377A_0844
(moaA)
,
EcE24377A_0845
(moaB)
,
EcE24377A_0846
(moaC)
,
EcE24377A_0847
(moaD)
,
EcE24377A_0848
(moaE)
View Structure
3
2033053-2033154
(+)
yybP-ykoY
2033285-2033852 (+)
EcE24377A_2050
Probable manganese efflux pump MntP
EcE24377A_2050
Single gene
DOOR ID:
2134261
EcE24377A_2050
View Structure
4
2244380-2244555
(-)
cobalamin
2243724-2244162 (-)
EcE24377A_2276
Cobalamin biosynthesis family protein
EcE24377A_2276
Single gene
DOOR ID:
2133702
EcE24377A_2276
View Structure
5
2366838-2366934
(-)
TPP
2366014-2366803 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcE24377A_2392
Operon
DOOR ID:
352914
EcE24377A_2388,
EcE24377A_2390,
EcE24377A_2391
(thiD)
,
EcE24377A_2392
(thiM)
View Structure
6
3515592-3515740
(-)
FMN
3514834-3515488 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcE24377A_3506
Single gene
DOOR ID:
2133663
EcE24377A_3506
(ribB)
View Structure
7
4500496-4500686
(+)
cobalamin
4500750-4502595 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EcE24377A_4507
Operon
DOOR ID:
353334
EcE24377A_4507
(btuB)
,
EcE24377A_4508
(murI)
View Structure
8
4533206-4533306
(-)
TPP
4531229-4533125 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcE24377A_4536
Operon
DOOR ID:
353340
EcE24377A_4531
(thiH)
,
EcE24377A_4532
(thiG)
,
EcE24377A_4533
(thiS)
,
EcE24377A_4534
(thiF)
,
EcE24377A_4535
(thiE)
,
EcE24377A_4536
(thiC)
View Structure
9
4572587-4572783
(-)
lysine
4571145-4572495 (-)
lysC
Aspartokinase
EcE24377A_4572
Single gene
DOOR ID:
2134585
EcE24377A_4572
(lysC)
View Structure
10
4709491-4709537
(+)
mini-ykkC
4709554-4709872 (+)
sugE
EcE24377A_4708
Single gene
DOOR ID:
2133388
EcE24377A_4708
(sugE)
View Structure
11
4806695-4806810
(+)
Mg sensor
4806903-4809600 (+)
mgtA
Magnesium-translocating P-type ATPase
EcE24377A_4814
Single gene
DOOR ID:
2134514
EcE24377A_4814
(mgtA)
View Structure
Genome:
Escherichia coli E24377A
(
NC_009801.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"77201-77300";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"76186-77170";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:14:"EcE24377A_0070";i:14;s:6:"Operon";i:15;s:6:"352473";i:16;s:62:"EcE24377A_0068(thiQ);EcE24377A_0069(thiP);EcE24377A_0070(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"865089-865233";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"866231-866744";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:14:"EcE24377A_0845";i:14;s:6:"Operon";i:15;s:6:"352637";i:16;s:104:"EcE24377A_0844(moaA);EcE24377A_0845(moaB);EcE24377A_0846(moaC);EcE24377A_0847(moaD);EcE24377A_0848(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2033053-2033154";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2033285-2033852";i:10;s:1:"+";i:11;s:14:"EcE24377A_2050";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:14:"EcE24377A_2050";i:14;s:11:"Single gene";i:15;s:7:"2134261";i:16;s:14:"EcE24377A_2050";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2244380-2244555";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2243724-2244162";i:10;s:1:"-";i:11;s:14:"EcE24377A_2276";i:12;s:37:"Cobalamin biosynthesis family protein";i:13;s:14:"EcE24377A_2276";i:14;s:11:"Single gene";i:15;s:7:"2133702";i:16;s:14:"EcE24377A_2276";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2366838-2366934";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2366014-2366803";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:14:"EcE24377A_2392";i:14;s:6:"Operon";i:15;s:6:"352914";i:16;s:71:"EcE24377A_2388;EcE24377A_2390;EcE24377A_2391(thiD);EcE24377A_2392(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3515592-3515740";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3514834-3515488";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:14:"EcE24377A_3506";i:14;s:11:"Single gene";i:15;s:7:"2133663";i:16;s:20:"EcE24377A_3506(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4500496-4500686";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4500750-4502595";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:14:"EcE24377A_4507";i:14;s:6:"Operon";i:15;s:6:"353334";i:16;s:41:"EcE24377A_4507(btuB);EcE24377A_4508(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4533206-4533306";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4531229-4533125";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:14:"EcE24377A_4536";i:14;s:6:"Operon";i:15;s:6:"353340";i:16;s:125:"EcE24377A_4531(thiH);EcE24377A_4532(thiG);EcE24377A_4533(thiS);EcE24377A_4534(thiF);EcE24377A_4535(thiE);EcE24377A_4536(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4572587-4572783";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4571145-4572495";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:14:"EcE24377A_4572";i:14;s:11:"Single gene";i:15;s:7:"2134585";i:16;s:20:"EcE24377A_4572(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4709491-4709537";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4709554-4709872";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:14:"EcE24377A_4708";i:14;s:11:"Single gene";i:15;s:7:"2133388";i:16;s:20:"EcE24377A_4708(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009801.1";i:2;s:25:"Escherichia coli E24377A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4806695-4806810";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4806903-4809600";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:14:"EcE24377A_4814";i:14;s:11:"Single gene";i:15;s:7:"2134514";i:16;s:20:"EcE24377A_4814(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
