Genome: Clostridium kluyveri DSM 555 (NC_009706.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 244041-244137 (-)TPP243294-243891 (+)CKL_0273

Predicted transcriptional regulator		CKL_0273Single gene

DOOR ID: 2107797		CKL_0273 View Structure
2 278931-279064 (-)ydaO-yuaA278404-278929 (-)CKL_0312

Predicted spore cortex-lytic enzyme		CKL_0312Single gene

DOOR ID: 2107808		CKL_0312 View Structure
3 285035-285232 (+)glmS285407-287234 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CKL_0317Single gene

DOOR ID: 2107810		CKL_0317 (glmS) View Structure
4 304406-304465 (+)fluoride304541-304985 (+)CKL_0333

Putative fluoride ion transporter CrcB		CKL_0333Operon

DOOR ID: 339718		CKL_0333,
CKL_0334,
CKL_0335		 View Structure
5 391099-391145 (+)PreQ1391237-392254 (+)CKL_0422

2-hydroxyglutaryl-CoA dehydratase-related protein		CKL_0422Operon

DOOR ID: 339743		CKL_0422,
CKL_0423,
CKL_0424,
CKL_0425		 View Structure
6 503077-503184 (+)SAM503492-503933 (+)CKL_0525

NifB-related protein		CKL_0525Single gene

DOOR ID: 2107910		CKL_0525 View Structure
7 587346-587518 (+)lysine587747-588947 (+)lysC1

Aspartokinase 		CKL_0607Operon

DOOR ID: 339773		CKL_0607 (lysC1),
CKL_0608 (lysA),
CKL_0609 (ndvB)		 View Structure
8 655295-655395 (+)SAM655479-656436 (+)CKL_0665

Methionine import ATP-binding protein MetN 		CKL_0665Operon

DOOR ID: 339790		CKL_0665,
CKL_0666		 View Structure
9 657951-658090 (-)ydaO-yuaA657182-657944 (-)CKL_0667

Predicted hydrolase		CKL_0667Single gene

DOOR ID: 2107971		CKL_0667 View Structure
10 769785-769876 (-)glycine769378-769648 (-)CKL_0776

CKL_0776Operon

DOOR ID: 339806		CKL_0775,
CKL_0776		 View Structure
11 818867-818971 (+)SAM819174-819954 (+)CKL_0822

Predicted ABC transporter; ATPase component		CKL_0822Operon

DOOR ID: 339814		CKL_0822,
CKL_0823,
CKL_0824		 View Structure
12 824780-824887 (+)SAM824965-825172 (+)CKL_0827

CKL_0827Single gene

DOOR ID: 2108045		CKL_0827 View Structure
13 982387-982497 (-)SAM980949-982230 (-)CKL_0975

O-acetyl-L-homoserine sulfhydrylase-related protein		CKL_0975Single gene

DOOR ID: 2108086		CKL_0975 View Structure
14 1054126-1054229 (+)SAM1054436-1055255 (+)nifH1

Nitrogenase iron protein (Nitrogenase Fe protein) (Nitrogenase component II) (Nitrogenase reductase)		CKL_1033Operon

DOOR ID: 339855		CKL_1033 (nifH1),
CKL_1034 (nifD2)		 View Structure
15 1058485-1058588 (+)SAM1058761-1060033 (+)nifB1

NifB1		CKL_1036Operon

DOOR ID: 339856		CKL_1036 (nifB1),
CKL_1037,
CKL_1038,
CKL_1039,
CKL_1040,
CKL_1041		 View Structure
16 1156141-1156219 (-)ZMP-ZTP1153808-1156043 (-)pfl

Pfl (4)		CKL_1107Operon

DOOR ID: 339872		CKL_1106 (act),
CKL_1107 (pfl)		 View Structure
17 1160200-1160286 (+)c-di-GMP-II1160336-1161089 (+)CKL_1111

Predicted type IV leader peptidase/N-methyltransferase		CKL_1111Single gene

DOOR ID: 2108148		CKL_1111 View Structure
18 1342278-1342388 (-)SAM1341860-1342145 (-)CKL_1307

CKL_1307Single gene

DOOR ID: 2108218		CKL_1307 View Structure
19 1524323-1524439 (+)THF1524579-1525371 (+)CKL_1477

CKL_1477Single gene

DOOR ID: 2108270		CKL_1477 View Structure
20 1619556-1619732 (+)lysine1619851-1621309 (+)CKL_1545

Predicted amino acid permease		CKL_1545Single gene

DOOR ID: 2108296		CKL_1545 View Structure
21 1712328-1712433 (+)SAM1712577-1713492 (+)metA2

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		CKL_1631Single gene

DOOR ID: 2108339		CKL_1631 (metA2) View Structure
22 1716209-1716322 (-)SAM1714855-1716067 (-)metK1

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CKL_1633Operon

DOOR ID: 339977		CKL_1632 (metB2),
CKL_1633 (metK1)		 View Structure
23 1721788-1721896 (-)TPP1721378-1721579 (-)thiS

ThiS		CKL_1639Operon

DOOR ID: 339978		CKL_1635 (thiE1),
CKL_1636 (thiH),
CKL_1637 (thiG),
CKL_1638 (thiF),
CKL_1639 (thiS)		 View Structure
24 1877586-1877675 (-)glycine1876374-1877463 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		CKL_1774Operon

DOOR ID: 340008		CKL_1769 (bfmBC),
CKL_1770 (lplA),
CKL_1771 (gcvPB),
CKL_1772 (gcvPA),
CKL_1773 (gcvH),
CKL_1774 (gcvT)		 View Structure
25 1880704-1880811 (-)TPP1879257-1880571 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CKL_1776Single gene

DOOR ID: 2108389		CKL_1776 (thiC) View Structure
26 1905598-1905701 (-)SAM1903878-1905516 (-)CKL_1794

Predicted methyl-accepting transducer		CKL_1794Single gene

DOOR ID: 2108402		CKL_1794 View Structure
27 1915314-1915422 (-)SAM1913979-1915035 (-)sbpA

SbpA		CKL_1803Operon

DOOR ID: 340012		CKL_1800 (cysA),
CKL_1801 (cysW),
CKL_1802 (cysT),
CKL_1803 (sbpA)		 View Structure
28 1916685-1916789 (+)SAM1917260-1918091 (+)CKL_1805

CKL_1805Operon

DOOR ID: 340013		CKL_1805,
CKL_1806,
CKL_1807,
CKL_1808		 View Structure
29 2077534-2077632 (+)TPP2077698-2078331 (+)CKL_2038

CKL_2038Single gene

DOOR ID: 2108476		CKL_2038 View Structure
30 2207259-2207375 (-)FMN2205872-2206982 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CKL_2169Operon

DOOR ID: 340082		CKL_2166 (ribH),
CKL_2167 (ribAB),
CKL_2168 (ribE),
CKL_2169 (ribD)		 View Structure
31 2220235-2220342 (-)SAM2218738-2220037 (-)CKL_2180

O-acetyl-L-homoserine sulfhydrylase-related protein		CKL_2180Operon

DOOR ID: 340085		CKL_2179,
CKL_2180		 View Structure
32 2377705-2377793 (+)c-di-GMP-I2377912-2378596 (+)CKL_2324

Predicted 3-oxoacyl-[acyl-carrier-protein] synthase		CKL_2324operon

DOOR ID: 340115		CKL_2324,
CKL_2325		 View Structure
33 2546053-2546156 (-)ykkC-yxkD2545675-2545996 (-)sugE

SugE		CKL_2463Single gene

DOOR ID: 2108639		CKL_2463 (sugE) View Structure
34 2760525-2760625 (-)purine2759842-2760322 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CKL_2689Operon

DOOR ID: 340189		CKL_2683 (purD),
CKL_2684 (purH),
CKL_2685 (purN),
CKL_2686 (purM),
CKL_2687 (purF),
CKL_2688 (purC),
CKL_2689 (purE)		 View Structure
35 2764166-2764266 (-)purine2762682-2764089 (-)CKL_2693

Predicted permease		CKL_2693Single gene

DOOR ID: 2108716		CKL_2693 View Structure
36 2857110-2857219 (-)SAM2856599-2856890 (-)CKL_2782

CKL_2782Operon

DOOR ID: 340212		CKL_2780 (nifD7),
CKL_2781 (nifD8),
CKL_2782		 View Structure
37 2955748-2955856 (+)TPP2955939-2956173 (+)CKL_2891

CKL_2891Single gene

DOOR ID: 2108812		CKL_2891 View Structure
38 2974666-2974771 (-)SAM2973772-2974588 (-)CKL_2913

Lipoprotein		CKL_2913Single gene

DOOR ID: 2108824		CKL_2913 View Structure
39 2982106-2982207 (-)TPP2981238-2982039 (-)thiD

ThiD 		CKL_2919Operon

DOOR ID: 340234		CKL_2917 (thiE),
CKL_2918 (thiM),
CKL_2919 (thiD)		 View Structure
40 3104112-3104226 (-)SAM3103680-3104004 (-)CKL_3054

Predicted transport protein		CKL_3054Single gene

DOOR ID: 2108897		CKL_3054 View Structure
41 3384086-3384182 (-)SAM3383499-3383976 (-)CKL_3334

CKL_3334Single gene

DOOR ID: 2109002		CKL_3334 View Structure
42 3472522-3472618 (-)yybP-ykoY3471726-3472389 (-)CKL_3423

CKL_3423Single gene

DOOR ID: 2109053		CKL_3423 View Structure
43 3478053-3478240 (-)cobalamin3477155-3477896 (-)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CKL_3429Operon

DOOR ID: 340319		CKL_3426 (cbiO),
CKL_3427 (cbiQ),
CKL_3428 (cbiN),
CKL_3429 (cbiM)		 View Structure
44 3562309-3562398 (-)c-di-GMP-I3561824-3562157 (-)CKL_3514

Uncharacterized protein		CKL_3514single gene

DOOR ID: 2109098		CKL_3514 View Structure
45 3574310-3574396 (-)glycine3572655-3574017 (-)aroP

AroP		CKL_3526Single gene

DOOR ID: 2109104		CKL_3526 (aroP) View Structure
46 3641330-3641499 (-)ykoK3639851-3641114 (-)CKL_3588

CKL_3588Single gene

DOOR ID: 2109129		CKL_3588 View Structure
47 3663329-3663447 (-)FMN3662462-3663089 (-)CKL_3611

Riboflavin transporter		CKL_3611Single gene

DOOR ID: 2109142		CKL_3611 View Structure
48 3719239-3719344 (-)SAM3717994-3719170 (-)metK3

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CKL_3674Single gene

DOOR ID: 2109171		CKL_3674 (metK3) View Structure
49 3897085-3897171 (-)c-di-GMP-I3896188-3896602 (-)CKL_3845

Uncharacterized protein		CKL_3845single gene

DOOR ID: 2109241		CKL_3845 View Structure
50 3903782-3903862 (+)ZMP-ZTP3904191-3905094 (+)CKL_3856

CKL_3856Operon

DOOR ID: 340396		CKL_3856,
CKL_3857		 View Structure
51 3903929-3904044 (+)THF3904191-3905094 (+)CKL_3856

CKL_3856Operon

DOOR ID: 340396		CKL_3856,
CKL_3857		 View Structure