Genome: Clostridium botulinum F str. Langeland (NC_009699.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 195646-195747 (+)SAM195826-197002 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLI_0231Single gene

DOOR ID: 2106258		CLI_0231 (metK) View Structure
2 210106-210222 (+)FMN210317-210911 (+)CLI_0240

Riboflavin transporter		CLI_0240Single gene

DOOR ID: 2107227		CLI_0240 View Structure
3 236297-236462 (+)ykoK236665-237931 (+)CLI_0268

PRC-barrel domain/MgtE domain/CBS domain protein		CLI_0268Single gene

DOOR ID: 2106900		CLI_0268 View Structure
4 302821-302996 (+)lysine303127-304591 (+)lysP

Lysine-specific permease		CLI_0322Single gene

DOOR ID: 2107404		CLI_0322 (lysP) View Structure
5 374097-374198 (+)purine374374-375676 (+)CLI_0386

Xanthine/uracil permease family protein		CLI_0386Operon

DOOR ID: 338979		CLI_0386,
CLI_0387 (xpt-1)		 View Structure
6 513822-513996 (+)lysine514157-515924 (+)CLI_0506

Na+/H+ antiporter family protein		CLI_0506Single gene

DOOR ID: 2107401		CLI_0506 View Structure
7 552883-552986 (-)TPP551777-552578 (-)thiD-1

Phosphomethylpyrimidine kinase 		CLI_0536Single gene

DOOR ID: 2106546		CLI_0536 (thiD-1) View Structure
8 664827-664932 (+)TPP664989-665673 (+)CLI_0634

Probable proton-coupled thiamine transporter YuaJ		CLI_0634Single gene

DOOR ID: 2107441		CLI_0634 View Structure
9 914574-914674 (+)THF914769-915549 (+)CLI_0876

Putative membrane protein		CLI_0876Single gene

DOOR ID: 2106742		CLI_0876 View Structure
10 1047348-1047529 (+)cobalamin1047671-1049153 (+)cobQ

Cobyric acid synthase		CLI_1000Operon

DOOR ID: 339084		CLI_1000 (cobQ),
CLI_1001 (cobD)		 View Structure
11 1225473-1225575 (+)SAM1225679-1226636 (+)CLI_1174

Methionine import ATP-binding protein MetN 		CLI_1174Operon

DOOR ID: 339120		CLI_1174,
CLI_1175,
CLI_1176		 View Structure
12 1405110-1405179 (+)glycine1405269-1405647 (+)grdX

GrdX protein		CLI_1341Single gene

DOOR ID: 2106193		CLI_1341 (grdX) View Structure
13 1486915-1487039 (-)ydaO-yuaA1486130-1486910 (-)CLI_1417

Cell Wall hydrolase		CLI_1417Single gene

DOOR ID: 2107499		CLI_1417 View Structure
14 1712206-1712300 (+)Nico1712410-1714945 (+)CLI_1616

CLI_1616Operon

DOOR ID: 339198		CLI_1616,
CLI_1617		 View Structure
15 1807857-1807960 (+)SAM1808081-1808969 (+)metF

Methylenetetrahydrofolate reductase (0)		CLI_1699Single gene

DOOR ID: 2106269		CLI_1699 (metF) View Structure
16 1991882-1991940 (-)fluoride1990637-1991825 (-)CLI_1852

Transporter; monovalent cation:proton antiporter-2 (CPA2) family		CLI_1852Single gene

DOOR ID: 2106961		CLI_1852 View Structure
17 2062064-2062169 (-)SAM2060658-2061939 (-)CLI_1940

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein		CLI_1940Operon

DOOR ID: 339257		CLI_1938 (metA),
CLI_1939 (hom-2),
CLI_1940		 View Structure
18 2202399-2202500 (-)purine2201267-2202332 (-)CLI_2073

Xanthine/uracil permease family protein		CLI_2073Operon

DOOR ID: 339288		CLI_2072,
CLI_2073		 View Structure
19 2462344-2462448 (-)TPP2461471-2462041 (-)thiW

ThiW protein		CLI_2304Operon

DOOR ID: 339330		CLI_2303 (thiM-2),
CLI_2304 (thiW)		 View Structure
20 3026063-3026168 (-)ykkC-yxkD3025545-3025983 (-)CLI_2879

MutT/NUDIX family protein		CLI_2879Single gene

DOOR ID: 2106824		CLI_2879 View Structure
21 3080650-3080768 (-)FMN3079328-3080426 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLI_2922Operon

DOOR ID: 339438		CLI_2921 (ribE),
CLI_2922 (ribD)		 View Structure
22 3086745-3086906 (-)ykoK3083730-3086376 (-)mgtA

Magnesium-importing ATPase 		CLI_2925Single gene

DOOR ID: 2107046		CLI_2925 (mgtA) View Structure
23 3099578-3099679 (-)purine3099007-3099487 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CLI_2936Operon

DOOR ID: 339440		CLI_2934 (purF-1),
CLI_2935 (purC),
CLI_2936 (purE)		 View Structure
24 3127129-3127228 (-)purine3125601-3127044 (-)CLI_2957

Xanthine/uracil permease family protein		CLI_2957Single gene

DOOR ID: 2107439		CLI_2957 View Structure
25 3129402-3129491 (-)glycine3127632-3128985 (-)CLI_2958

Sodium:alanine symporter family protein		CLI_2958Single gene

DOOR ID: 2106273		CLI_2958 View Structure
26 3145124-3145223 (-)TPP3143650-3145027 (-)purF-2

Amidophosphoribosyltransferase (ATase) (4) (Glutamine phosphoribosylpyrophosphate amidotransferase) (GPATase)		CLI_2968Single gene

DOOR ID: 2106896		CLI_2968 (purF-2) View Structure
27 3149843-3149956 (+)FMN3150316-3150958 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		CLI_2975Single gene

DOOR ID: 2106740		CLI_2975 (ribB) View Structure
28 3509864-3509923 (-)fluoride3509441-3509594 (-)CLI_3346

CLI_3346Operon

DOOR ID: 339519		CLI_3345,
CLI_3346		 View Structure
29 3519854-3519944 (-)ZMP-ZTP3517307-3519536 (-)pfl

Formate acetyltransferase 1 (4)		CLI_3354Single gene

DOOR ID: 2106919		CLI_3354 (pfl) View Structure
30 3600502-3600599 (-)purine3598959-3600414 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLI_3466Operon

DOOR ID: 339536		CLI_3465 (guaA),
CLI_3466 (guaB)		 View Structure
31 3658055-3658223 (-)lysine3656689-3657892 (-)lysC

Aspartokinase 		CLI_3510Operon

DOOR ID: 339542		CLI_3509 (lysA),
CLI_3510 (lysC)		 View Structure
32 3748257-3748367 (-)SAM3746793-3748119 (-)CLI_3587

Na+/H+ antiporter family protein		CLI_3587Single gene

DOOR ID: 2107099		CLI_3587 View Structure
33 3755468-3755648 (-)glmS3753598-3755425 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLI_3593Single gene

DOOR ID: 2106351		CLI_3593 (glmS) View Structure
34 3775383-3775509 (+)ydaO-yuaA3776382-3777246 (-)CLI_3615

Oxidoreductase; pyridine nucleotide-disulphide family		CLI_3615Operon

DOOR ID: 339566		CLI_3615 View Structure