Genome: Bacillus cytotoxicus NVH 391-98 (NC_009674.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 163982-164138 (+)glmS164262-166131 (+)Bcer98_0152

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Bcer98_0152Single gene

DOOR ID: 2099267		Bcer98_0152 View Structure
2 196943-197052 (+)SAM197188-198106 (+)Bcer98_0186

Binding-protein-dependent transport systems inner membrane component		Bcer98_0186Operon

DOOR ID: 336057		Bcer98_0186,
Bcer98_0187,
Bcer98_0188,
Bcer98_0189,
Bcer98_0190		 View Structure
3 271074-271175 (+)purine271337-272876 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		Bcer98_0253Single gene

DOOR ID: 2099303		Bcer98_0253 (guaA) View Structure
4 273018-273120 (+)purine273249-274575 (+)Bcer98_0254

Xanthine/uracil/vitamin C permease		Bcer98_0254Single gene

DOOR ID: 2099304		Bcer98_0254 View Structure
5 308099-308200 (+)purine308306-308792 (+)Bcer98_0267

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Bcer98_0267Operon

DOOR ID: 336073		Bcer98_0267,
Bcer98_0268,
Bcer98_0269,
Bcer98_0270,
Bcer98_0271,
Bcer98_0272,
Bcer98_0273,
Bcer98_0274,
Bcer98_0275,
Bcer98_0276 (purN),
Bcer98_0277 (purH)		 View Structure
6 335673-335778 (+)SAM335904-336924 (+)Bcer98_0291

Methionine import ATP-binding protein MetN 		Bcer98_0291Operon

DOOR ID: 336076		Bcer98_0291,
Bcer98_0292,
Bcer98_0293		 View Structure
7 357544-357645 (-)purine356148-357345 (-)Bcer98_0310

Na dependent nucleoside transporter domain protein		Bcer98_0310Single gene

DOOR ID: 2099327		Bcer98_0310 View Structure
8 417418-417527 (+)TPP417601-418411 (+)Bcer98_0363

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Bcer98_0363Operon

DOOR ID: 336087		Bcer98_0363,
Bcer98_0364 (thiE),
Bcer98_0365		 View Structure
9 420958-421045 (+)c-di-GMP-I421182-422925 (+)Bcer98_0367

Methyl-accepting chemotaxis sensory transducer		Bcer98_0367operon

DOOR ID: 336088		Bcer98_0367,
Bcer98_0368		 View Structure
10 426611-426712 (+)TPP426816-427137 (+)Bcer98_0369

Bcer98_0369Operon

DOOR ID: 336089		Bcer98_0369,
Bcer98_0370,
Bcer98_0371,
Bcer98_0372		 View Structure
11 703806-703908 (+)TPP703993-704689 (+)Bcer98_0612

Aminopyrimidine aminohydrolase 		Bcer98_0612Operon

DOOR ID: 336133		Bcer98_0612,
Bcer98_0613,
Bcer98_0614,
Bcer98_0615,
Bcer98_0616,
Bcer98_0617,
Bcer98_0618,
Bcer98_0619 (thiG),
Bcer98_0620,
Bcer98_0621		 View Structure
12 711905-712051 (+)ydaO-yuaA712136-712535 (+)Bcer98_0622

Bcer98_0622Operon

DOOR ID: 336134		Bcer98_0622,
Bcer98_0623		 View Structure
13 713115-713260 (+)ydaO-yuaA713557-715225 (+)Bcer98_0624

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		Bcer98_0624Operon

DOOR ID: 336135		Bcer98_0624,
Bcer98_0625,
Bcer98_0626,
Bcer98_0627		 View Structure
14 771380-771561 (-)lysine769814-771230 (-)Bcer98_0683

Amino acid permease-associated region		Bcer98_0683Operon

DOOR ID: 336143		Bcer98_0681,
Bcer98_0682,
Bcer98_0683		 View Structure
15 1156483-1156657 (-)yybP-ykoY1155596-1156400 (-)Bcer98_1036

Integral membrane protein TerC		Bcer98_1036Single gene

DOOR ID: 2099679		Bcer98_1036 View Structure
16 1180651-1180694 (+)PreQ11180787-1181450 (+)Bcer98_1064

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		Bcer98_1064Operon

DOOR ID: 336207		Bcer98_1064,
Bcer98_1065,
Bcer98_1066,
Bcer98_1067		 View Structure
17 1252042-1252224 (+)lysine1252511-1253828 (+)Bcer98_1141

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Bcer98_1141Single gene

DOOR ID: 2099736		Bcer98_1141 View Structure
18 1253944-1254054 (+)SAM1254123-1254267 (+)Bcer98_1142

Bcer98_1142Single gene

DOOR ID: 2099737		Bcer98_1142 View Structure
19 1266715-1266820 (+)SAM1268586-1268943 (+)Bcer98_1156

Bcer98_1156Operon

DOOR ID: 336220		Bcer98_1156,
Bcer98_1157		 View Structure
20 1319447-1319591 (+)FMN1319753-1320332 (+)Bcer98_1205

Riboflavin transporter		Bcer98_1205Single gene

DOOR ID: 2099770		Bcer98_1205 View Structure
21 1409725-1409826 (+)purine1409935-1410529 (+)Bcer98_1302

Xanthine phosphoribosyltransferase (XPRTase) (2)		Bcer98_1302Operon

DOOR ID: 336247		Bcer98_1302,
Bcer98_1303		 View Structure
22 1422391-1422554 (+)ykoK1422918-1423626 (+)Bcer98_1315

Mg(2+) P-type ATPase-like protein		Bcer98_1315Single gene

DOOR ID: 2099816		Bcer98_1315 View Structure
23 1428621-1428665 (+)PreQ11428668-1429157 (+)Bcer98_1323

Bcer98_1323Single gene

DOOR ID: 2099821		Bcer98_1323 View Structure
24 1528756-1528942 (-)lysine1527299-1528532 (-)Bcer98_1430

Aspartokinase 		Bcer98_1430Single gene

DOOR ID: 2099872		Bcer98_1430 View Structure
25 2008244-2008349 (-)TPP2007440-2008124 (-)Bcer98_1892

Aminopyrimidine aminohydrolase 		Bcer98_1892Single gene

DOOR ID: 2100142		Bcer98_1892 View Structure
26 2155259-2155451 (+)lysine2155555-2157022 (+)Bcer98_2051

Amino acid permease-associated region		Bcer98_2051Single gene

DOOR ID: 2100224		Bcer98_2051 View Structure
27 2173282-2173386 (-)SAM2171986-2173189 (-)Bcer98_2071

Peptidase M20 domain-containing protein 2		Bcer98_2071Single gene

DOOR ID: 2100231		Bcer98_2071 View Structure
28 2208899-2208997 (-)SAM2208537-2208798 (-)Bcer98_2111

Bcer98_2111Single gene

DOOR ID: 2100243		Bcer98_2111 View Structure
29 2226760-2226902 (+)ydaO-yuaA2227002-2227146 (+)Bcer98_2130

Bcer98_2130Single gene

DOOR ID: 2100252		Bcer98_2130 View Structure
30 2538066-2538167 (-)purine2537138-2537864 (-)Bcer98_2444

Transcriptional regulator; GntR family		Bcer98_2444Single gene

DOOR ID: 2100437		Bcer98_2444 View Structure
31 2787786-2787972 (+)cobalamin2788100-2790389 (+)Bcer98_2704

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		Bcer98_2704Single gene

DOOR ID: 2100523		Bcer98_2704 View Structure
32 2818029-2818169 (-)SAM2816757-2817939 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		Bcer98_2732Operon

DOOR ID: 336467		Bcer98_2731 (mtnA),
Bcer98_2732 (mtnK)		 View Structure
33 2820365-2820470 (+)SAM2820533-2821778 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		Bcer98_2735Operon

DOOR ID: 336468		Bcer98_2735 (mtnW),
Bcer98_2736 (mtnX),
Bcer98_2737 (mtnB),
Bcer98_2738		 View Structure
34 2884077-2884221 (+)FMN2884512-2885625 (+)Bcer98_2808

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Bcer98_2808Operon

DOOR ID: 336479		Bcer98_2808,
Bcer98_2809,
Bcer98_2810,
Bcer98_2811 (ribH)		 View Structure
35 3033357-3033467 (-)SAM3031439-3033284 (-)Bcer98_2984

Homocysteine S-methyltransferase		Bcer98_2984Operon

DOOR ID: 336511		Bcer98_2983,
Bcer98_2984		 View Structure
36 3033666-3033778 (+)SAM3033878-3034991 (+)Bcer98_2985

Cystathionine gamma-synthase (8)		Bcer98_2985Operon

DOOR ID: 336512		Bcer98_2985,
Bcer98_2986		 View Structure
37 3498574-3498695 (-)SAM3497206-3498406 (-)Bcer98_3437

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Bcer98_3437Single gene

DOOR ID: 2100825		Bcer98_3437 View Structure
38 3536507-3536608 (+)TPP3536696-3537299 (+)Bcer98_3476

Putative proton-coupled thiamine transporter YuaJ		Bcer98_3476Single gene

DOOR ID: 2100850		Bcer98_3476 View Structure
39 3643238-3643347 (-)SAM3641994-3643020 (-)Bcer98_3582

Methionine import ATP-binding protein MetN 		Bcer98_3582Operon

DOOR ID: 336629		Bcer98_3580,
Bcer98_3581,
Bcer98_3582		 View Structure
40 3708919-3708978 (+)fluoride3709032-3709440 (+)Bcer98_3649

Putative fluoride ion transporter CrcB		Bcer98_3649Operon

DOOR ID: 336643		Bcer98_3649,
Bcer98_3650		 View Structure
41 3820558-3820673 (-)TPP3818477-3820238 (-)Bcer98_3762

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Bcer98_3762Single gene

DOOR ID: 2100984		Bcer98_3762 View Structure
42 3979620-3979725 (-)SAM3978228-3979527 (-)Bcer98_3925

O-acetylhomoserine/O-acetylserine sulfhydrylase (7)		Bcer98_3925Operon

DOOR ID: 336689		Bcer98_3924,
Bcer98_3925		 View Structure