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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80562-80652
(-)
glycine
78976-80254 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
MRA_0072
Operon
DOOR ID:
318019
MRA_0071
(sdaA)
,
MRA_0072
(glyA)
View Structure
2
311047-311220
(-)
cobalamin
309238-310801 (-)
MRA_0265
PPE family protein
MRA_0265
Operon
DOOR ID:
318058
MRA_0263
(cobU)
,
MRA_0264
(cobQ1)
,
MRA_0265
View Structure
3
502357-502467
(+)
TPP
503476-503683 (+)
thiS
Sulfur carrier protein ThiS
MRA_0422
Operon
DOOR ID:
318092
MRA_0421
(thiO)
,
MRA_0422
(thiS)
,
MRA_0423
(thiG)
View Structure
4
511526-511636
(-)
TPP
509067-509865 (-)
thiD
Phosphomethylpyrimidine kinase
MRA_0428
Operon
DOOR ID:
318093
MRA_0427,
MRA_0428
(thiD)
,
MRA_0429
(thiC)
View Structure
5
966851-967073
(-)
ydaO-yuaA
965617-966841 (-)
rpfA
Putative resuscitation-promoting factor RpfA
MRA_0874
Single gene
DOOR ID:
2065234
MRA_0874
(rpfA)
View Structure
6
1262789-1263007
(-)
cobalamin
1260376-1262656 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MRA_1142
Single gene
DOOR ID:
2065342
MRA_1142
(metE)
View Structure
7
1737026-1737195
(+)
ykoK
1737492-1737729 (+)
MRA_1547
MRA_1547
Single gene
DOOR ID:
2065494
MRA_1547
View Structure
8
2057527-2057701
(+)
ykoK
2058003-2058303 (+)
MRA_1818
PE family protein
MRA_1818
Operon
DOOR ID:
318418
MRA_1818,
MRA_1819
View Structure
9
2085545-2085642
(+)
glycine
2085808-2088634 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MRA_1843
Operon
DOOR ID:
318423
MRA_1842,
MRA_1842A,
MRA_1843
(gcvB)
View Structure
10
3736812-3736931
(+)
SAM-IV
3736967-3738317 (+)
metC
O-acetylhomoserine sulfhydrylase
MRA_3381
Operon
DOOR ID:
318778
MRA_3381
(metC)
,
MRA_3382
(metX)
,
MRA_3383
View Structure
Genome:
Mycobacterium tuberculosis H37Ra
(
NC_009525.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"80562-80652";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"78976-80254";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"MRA_0072";i:14;s:6:"Operon";i:15;s:6:"318019";i:16;s:29:"MRA_0071(sdaA);MRA_0072(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"311047-311220";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"309238-310801";i:10;s:1:"-";i:11;s:8:"MRA_0265";i:12;s:18:"PPE family protein";i:13;s:8:"MRA_0265";i:14;s:6:"Operon";i:15;s:6:"318058";i:16;s:39:"MRA_0263(cobU);MRA_0264(cobQ1);MRA_0265";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"502357-502467";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"503476-503683";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:27:"Sulfur carrier protein ThiS";i:13;s:8:"MRA_0422";i:14;s:6:"Operon";i:15;s:6:"318092";i:16;s:44:"MRA_0421(thiO);MRA_0422(thiS);MRA_0423(thiG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"511526-511636";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"509067-509865";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:8:"MRA_0428";i:14;s:6:"Operon";i:15;s:6:"318093";i:16;s:38:"MRA_0427;MRA_0428(thiD);MRA_0429(thiC)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"966851-967073";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"965617-966841";i:10;s:1:"-";i:11;s:4:"rpfA";i:12;s:44:"Putative resuscitation-promoting factor RpfA";i:13;s:8:"MRA_0874";i:14;s:11:"Single gene";i:15;s:7:"2065234";i:16;s:14:"MRA_0874(rpfA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1262789-1263007";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1260376-1262656";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"MRA_1142";i:14;s:11:"Single gene";i:15;s:7:"2065342";i:16;s:14:"MRA_1142(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1737026-1737195";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1737492-1737729";i:10;s:1:"+";i:11;s:8:"MRA_1547";i:12;s:0:"";i:13;s:8:"MRA_1547";i:14;s:11:"Single gene";i:15;s:7:"2065494";i:16;s:8:"MRA_1547";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2057527-2057701";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2058003-2058303";i:10;s:1:"+";i:11;s:8:"MRA_1818";i:12;s:17:"PE family protein";i:13;s:8:"MRA_1818";i:14;s:6:"Operon";i:15;s:6:"318418";i:16;s:17:"MRA_1818;MRA_1819";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2085545-2085642";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2085808-2088634";i:10;s:1:"+";i:11;s:4:"gcvB";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:8:"MRA_1843";i:14;s:6:"Operon";i:15;s:6:"318423";i:16;s:33:"MRA_1842;MRA_1842A;MRA_1843(gcvB)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009525.1";i:2;s:33:"Mycobacterium tuberculosis H37Ra ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3736812-3736931";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3736967-3738317";i:10;s:1:"+";i:11;s:4:"metC";i:12;s:32:"O-acetylhomoserine sulfhydrylase";i:13;s:8:"MRA_3381";i:14;s:6:"Operon";i:15;s:6:"318778";i:16;s:38:"MRA_3381(metC);MRA_3382(metX);MRA_3383";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}}
