Genome: Pseudomonas putida F1 (NC_009512.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 630351-630492 (-)FMN629619-630270 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		Pput_0564Single gene

DOOR ID: 2058299		Pput_0564 (ribB) View Structure
2 878598-878737 (-)yybP-ykoY877924-878509 (-)Pput_0788

Pput_0788Single gene

DOOR ID: 2058391		Pput_0788 View Structure
3 2578091-2578308 (+)cobalamin2578407-2579484 (+)Pput_2268

Cobalamin biosynthesis protein CobW		Pput_2268Operon

DOOR ID: 315316		Pput_2268,
Pput_2269 (cobN),
Pput_2270		 View Structure
4 2687569-2687792 (-)cobalamin2687287-2687476 (-)Pput_2355

Cobalt transporter; subunit CbtB		Pput_2355Operon

DOOR ID: 315331		Pput_2353,
Pput_2354,
Pput_2355		 View Structure
5 2879095-2879209 (-)TPP2877706-2878372 (-)Pput_2530

Aminopyrimidine aminohydrolase 		Pput_2530Operon

DOOR ID: 315369		Pput_2530,
Pput_2531		 View Structure
6 3682121-3682329 (+)cobalamin3682335-3684564 (+)Pput_3275

TonB-dependent siderophore receptor		Pput_3275Single gene

DOOR ID: 2059356		Pput_3275 View Structure
7 3685877-3686075 (+)cobalamin3686185-3687196 (+)Pput_3277

Periplasmic binding protein		Pput_3277Operon

DOOR ID: 315508		Pput_3277,
Pput_3278,
Pput_3279		 View Structure
8 4533467-4533518 (+)mini-ykkC4533543-4533861 (+)Pput_4019

Pput_4019Single gene

DOOR ID: 2059678		Pput_4019 View Structure
9 4563674-4563895 (-)cobalamin4562942-4563554 (-)Pput_4047

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		Pput_4047Operon

DOOR ID: 315661		Pput_4038 (cobS),
Pput_4039,
Pput_4040 (cobT),
Pput_4041 (cobU),
Pput_4042,
Pput_4043,
Pput_4044 (cobD),
Pput_4045,
Pput_4046,
Pput_4047		 View Structure
10 5376240-5376346 (-)TPP5374204-5376085 (-)Pput_4798

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Pput_4798Single gene

DOOR ID: 2059958		Pput_4798 View Structure
11 5438047-5438143 (+)SAH5438163-5439573 (+)Pput_4849

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		Pput_4849Single gene

DOOR ID: 2059981		Pput_4849 View Structure
12 5628739-5628808 (-)SAH5626797-5628189 (+)Pput_5006

Pput_5006Operon

DOOR ID: 315866		Pput_5006,
Pput_5007		 View Structure