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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
352459-352539
(-)
ZMP-ZTP
350839-352432 (-)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
BRADO0338
Single gene
DOOR ID:
2032230
BRADO0338
(purH)
View Structure
2
1627351-1627422
(-)
SAH
1624663-1625965 (-)
BRADO1520
Putative Multicopper oxidase putative Copper resistance protein A
BRADO1520
Operon
DOOR ID:
301968
BRADO1519,
BRADO1520,
BRADO1521,
BRADO1522
View Structure
3
4208791-4208860
(-)
SAH
4207034-4207721 (-)
BRADO4014
Putative transporter (YecA family protein with SEC-C motif)
BRADO4014
Single gene
DOOR ID:
2033869
BRADO4014
View Structure
4
5111599-5111792
(-)
cobalamin
5110842-5111475 (-)
BRADO4910
BRADO4910
Operon
DOOR ID:
302570
BRADO4903
(cobJ)
,
BRADO4904
(cobI)
,
BRADO4905
(cobH)
,
BRADO4906,
BRADO4907
(cobN)
,
BRADO4908,
BRADO4909,
BRADO4910
View Structure
5
5912069-5912179
(+)
TPP
5913170-5913368 (+)
thiS
Thiamine biosynthesis protein ThiS
BRADO5710
Operon
DOOR ID:
302712
BRADO5709
(thiO)
,
BRADO5710
(thiS)
View Structure
6
6258242-6258436
(-)
FMN
6257570-6258176 (-)
BRADO6033
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
BRADO6033
Single gene
DOOR ID:
2034675
BRADO6033
View Structure
7
6715169-6715248
(-)
sam-alpha
6713862-6715086 (-)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
BRADO6461
Operon
DOOR ID:
302829
BRADO6460,
BRADO6461
(metX)
View Structure
8
6915814-6915921
(+)
SAH
6916250-6916610 (-)
BRADO6659
BRADO6659
Single gene
DOOR ID:
2034987
BRADO6659
View Structure
9
7028035-7028114
(+)
sam-alpha
7028192-7029431 (+)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BRADO6770
Single gene
DOOR ID:
2035037
BRADO6770
(metZ)
View Structure
10
7058665-7058767
(-)
ykkC-yxkD
7057519-7058590 (-)
BRADO6798
Putative ABC transporter; substrate-binding protein
BRADO6798
Single gene
DOOR ID:
2035051
BRADO6798
View Structure
11
7453423-7453584
(+)
SAH
7454456-7455113 (-)
msrA
Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)
BRADO7141
Single gene
DOOR ID:
2035200
BRADO7141
(msrA)
View Structure
Genome:
Bradyrhizobium sp. ORS 278
(
NC_009445.1
);
Phylum:
Alphaproteobacteria
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ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"352459-352539";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"350839-352432";i:10;s:1:"-";i:11;s:4:"purH";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"BRADO0338";i:14;s:11:"Single gene";i:15;s:7:"2032230";i:16;s:15:"BRADO0338(purH)";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1627351-1627422";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1624663-1625965";i:10;s:1:"-";i:11;s:9:"BRADO1520";i:12;s:66:"Putative Multicopper oxidase putative Copper resistance protein A ";i:13;s:9:"BRADO1520";i:14;s:6:"Operon";i:15;s:6:"301968";i:16;s:39:"BRADO1519;BRADO1520;BRADO1521;BRADO1522";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4208791-4208860";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4207034-4207721";i:10;s:1:"-";i:11;s:9:"BRADO4014";i:12;s:59:"Putative transporter (YecA family protein with SEC-C motif)";i:13;s:9:"BRADO4014";i:14;s:11:"Single gene";i:15;s:7:"2033869";i:16;s:9:"BRADO4014";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5111599-5111792";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5110842-5111475";i:10;s:1:"-";i:11;s:9:"BRADO4910";i:12;s:0:"";i:13;s:9:"BRADO4910";i:14;s:6:"Operon";i:15;s:6:"302570";i:16;s:103:"BRADO4903(cobJ);BRADO4904(cobI);BRADO4905(cobH);BRADO4906;BRADO4907(cobN);BRADO4908;BRADO4909;BRADO4910";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"5912069-5912179";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5913170-5913368";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"BRADO5710";i:14;s:6:"Operon";i:15;s:6:"302712";i:16;s:31:"BRADO5709(thiO);BRADO5710(thiS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6258242-6258436";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"6257570-6258176";i:10;s:1:"-";i:11;s:9:"BRADO6033";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:9:"BRADO6033";i:14;s:11:"Single gene";i:15;s:7:"2034675";i:16;s:9:"BRADO6033";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6715169-6715248";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"6713862-6715086";i:10;s:1:"-";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"BRADO6461";i:14;s:6:"Operon";i:15;s:6:"302829";i:16;s:25:"BRADO6460;BRADO6461(metX)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6915814-6915921";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6916250-6916610";i:10;s:1:"-";i:11;s:9:"BRADO6659";i:12;s:0:"";i:13;s:9:"BRADO6659";i:14;s:11:"Single gene";i:15;s:7:"2034987";i:16;s:9:"BRADO6659";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7028035-7028114";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"7028192-7029431";i:10;s:1:"+";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"BRADO6770";i:14;s:11:"Single gene";i:15;s:7:"2035037";i:16;s:15:"BRADO6770(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7058665-7058767";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"7057519-7058590";i:10;s:1:"-";i:11;s:9:"BRADO6798";i:12;s:51:"Putative ABC transporter; substrate-binding protein";i:13;s:9:"BRADO6798";i:14;s:11:"Single gene";i:15;s:7:"2035051";i:16;s:9:"BRADO6798";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009445.1";i:2;s:27:"Bradyrhizobium sp. ORS 278 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7453423-7453584";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"7454456-7455113";i:10;s:1:"-";i:11;s:4:"msrA";i:12;s:156:"Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)";i:13;s:9:"BRADO7141";i:14;s:11:"Single gene";i:15;s:7:"2035200";i:16;s:15:"BRADO7141(msrA)";i:17;s:50:"cellular protein modification process [GO:0006464]";i:18;s:15:"View Structure ";}}
