Genome: Aeromonas salmonicida subsp. salmonicida A449 (NC_009348.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 79218-79396 (+)cobalamin79447-81283 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ASA_0076Single gene

DOOR ID: 2011130
ASA_0076 (btuB) View Structure
2 365078-365165 (+)c-di-GMP-I365304-366681 (+)lafK

Two-component system lateral flagellar response regulator

DOOR ID: 290889
ASA_0353 (lafK),
ASA_0354 (lfiE),
ASA_0355 (fliF),
ASA_0356 (fliG),
ASA_0357 (lfiH),
ASA_0358 (lfiI),
ASA_0359 (lfiJ)
View Structure
3 482035-482141 (+)yybP-ykoY482230-483217 (+)ASA_0471

Ca2+/Na+ antiporter
ASA_0471Single gene

DOOR ID: 2011265
ASA_0471 View Structure
4 610617-610702 (-)c-di-GMP-I609125-610583 (-)ASA_0604

Chitin-binding protein; carbohydrate-binding module family 33
ASA_0604single gene

DOOR ID: 2011321
ASA_0604 View Structure
5 899660-899745 (+)c-di-GMP-I899830-902893 (+)cdxA

ASA_0873single gene

DOOR ID: 2011445
ASA_0873 (cdxA) View Structure
6 1302132-1302211 (+)glycine1302438-1303815 (+)ASA_1257

Sodium/alanine symporter
ASA_1257Single gene

DOOR ID: 2011609
ASA_1257 View Structure
7 1302217-1302332 (+)glycine1302438-1303815 (+)ASA_1257

Sodium/alanine symporter
ASA_1257Single gene

DOOR ID: 2011609
ASA_1257 View Structure
8 1344316-1344475 (+)FMN1344579-1345233 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ASA_1293Single gene

DOOR ID: 2011640
ASA_1293 (ribB) View Structure
9 1566344-1566513 (+)ykoK1566620-1567979 (+)mgtE

Magnesium transporter MgtE
ASA_1500Single gene

DOOR ID: 2011706
ASA_1500 (mgtE) View Structure
10 1862074-1862245 (+)lysine1862331-1863912 (+)nhaC

Na+/H+ antiporter
ASA_1781Single gene

DOOR ID: 2011821
ASA_1781 (nhaC) View Structure
11 2755273-2755497 (+)lysine2755586-2756939 (+)lysC

ASA_2578Single gene

DOOR ID: 2012215
ASA_2578 (lysC) View Structure
12 2971068-2971207 (-)MOCO2969324-2969891 (-)napF

Ferredoxin-type protein NapF

DOOR ID: 291293
ASA_2772 (napD),
ASA_2773 (napF)
View Structure
13 3695846-3695936 (+)TPP3696041-3697022 (+)thiB

ABC-type thiamine transporter; periplasmic binding protein

DOOR ID: 291399
ASA_3415 (thiB),
ASA_3416 (thiP),
ASA_3417 (thiQ)
View Structure
14 4015954-4016040 (-)c-di-GMP-I4015532-4015865 (-)ASA_3724

Uncharacterized protein
ASA_3724single gene

DOOR ID: 2012786
ASA_3724 View Structure
15 4191397-4191510 (-)TPP4189127-4191134 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 291479
ASA_3900 (thiH),
ASA_3901 (thiG),
ASA_3902 (thiS),
ASA_3903 (thiF),
ASA_3904 (thiE),
ASA_3905 (thiC)
View Structure