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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
45958-46157
(+)
FMN
46326-46980 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Shew_0040
Single gene
DOOR ID:
1992712
Shew_0040
(ribB)
View Structure
2
101467-101601
(+)
MOCO
102680-103211 (+)
Shew_0088
Molybdenum cofactor biosynthesis protein B
Shew_0088
Operon
DOOR ID:
281987
Shew_0088,
Shew_0089
(moaC)
,
Shew_0090,
Shew_0091,
Shew_0092,
Shew_0093,
Shew_0094
View Structure
3
554656-554775
(-)
glycine
553039-554413 (-)
Shew_0496
Amino acid carrier protein
Shew_0496
Single gene
DOOR ID:
1992901
Shew_0496
View Structure
4
812086-812264
(+)
cobalamin
812367-813342 (+)
Shew_0712
ABC transporter-related protein
Shew_0712
Operon
DOOR ID:
282095
Shew_0712,
Shew_0713
View Structure
5
889835-890011
(+)
lysine
890140-891499 (+)
Shew_0779
Aspartokinase
Shew_0779
Operon
DOOR ID:
282108
Shew_0779,
Shew_0780
View Structure
6
1879203-1879288
(+)
c-di-GMP-I
1879359-1882428 (+)
Shew_1642
Peptidase M11; gametolysin
Shew_1642
single gene
DOOR ID:
1993466
Shew_1642
View Structure
7
1985177-1985297
(+)
TPP
1985369-1987511 (+)
Shew_1735
TonB-dependent receptor
Shew_1735
Single gene
DOOR ID:
1993513
Shew_1735
View Structure
8
2425138-2425236
(-)
TPP
2422908-2424960 (-)
Shew_2096
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Shew_2096
Operon
DOOR ID:
282344
Shew_2091
(thiH)
,
Shew_2092,
Shew_2093,
Shew_2094,
Shew_2095,
Shew_2096
View Structure
9
3047231-3047447
(-)
lysine
3045586-3047152 (-)
Shew_2582
Na+/H+ antiporter NhaC
Shew_2582
Single gene
DOOR ID:
1993932
Shew_2582
View Structure
10
3551046-3551262
(-)
cobalamin
3548976-3550947 (-)
Shew_2990
TonB-dependent receptor
Shew_2990
Single gene
DOOR ID:
1994153
Shew_2990
View Structure
11
3797788-3797970
(+)
yybP-ykoY
3797973-3798528 (+)
Shew_3189
Shew_3189
Single gene
DOOR ID:
1994275
Shew_3189
View Structure
Genome:
Shewanella loihica PV-4
(
NC_009092.1
);
Phylum:
Gammaproteobacteria
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threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1879203-1879288";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1879359-1882428";i:10;s:1:"+";i:11;s:9:"Shew_1642";i:12;s:26:"Peptidase M11; gametolysin";i:13;s:9:"Shew_1642";i:14;s:11:"single gene";i:15;s:7:"1993466";i:16;s:9:"Shew_1642";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1985177-1985297";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1985369-1987511";i:10;s:1:"+";i:11;s:9:"Shew_1735";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Shew_1735";i:14;s:11:"Single gene";i:15;s:7:"1993513";i:16;s:9:"Shew_1735";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2425138-2425236";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2422908-2424960";i:10;s:1:"-";i:11;s:9:"Shew_2096";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Shew_2096";i:14;s:6:"Operon";i:15;s:6:"282344";i:16;s:65:"Shew_2091(thiH);Shew_2092;Shew_2093;Shew_2094;Shew_2095;Shew_2096";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3047231-3047447";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3045586-3047152";i:10;s:1:"-";i:11;s:9:"Shew_2582";i:12;s:22:"Na+/H+ antiporter NhaC";i:13;s:9:"Shew_2582";i:14;s:11:"Single gene";i:15;s:7:"1993932";i:16;s:9:"Shew_2582";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3551046-3551262";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3548976-3550947";i:10;s:1:"-";i:11;s:9:"Shew_2990";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Shew_2990";i:14;s:11:"Single gene";i:15;s:7:"1994153";i:16;s:9:"Shew_2990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009092.1";i:2;s:24:"Shewanella loihica PV-4 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3797788-3797970";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3797973-3798528";i:10;s:1:"+";i:11;s:9:"Shew_3189";i:12;s:0:"";i:13;s:9:"Shew_3189";i:14;s:11:"Single gene";i:15;s:7:"1994275";i:16;s:9:"Shew_3189";i:17;s:0:"";i:18;s:15:"View Structure ";}}
