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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
68054-68153
(+)
TPP
68187-69171 (+)
tbpA
ABC transporter; periplasmic binding protein; thiB subfamily
Rsph17029_0058
Operon
DOOR ID:
273483
Rsph17029_0058
(tbpA)
,
Rsph17029_0059
(thiP)
,
Rsph17029_0060
View Structure
2
522526-522602
(+)
sam-alpha
522650-523832 (+)
Rsph17029_0500
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Rsph17029_0500
Single gene
DOOR ID:
1972632
Rsph17029_0500
View Structure
3
888346-888437
(+)
glycine
888575-889709 (+)
gcvT
Glycine cleavage system T protein
Rsph17029_0868
Operon
DOOR ID:
273644
Rsph17029_0868
(gcvT)
,
Rsph17029_0869,
Rsph17029_0870
View Structure
4
1097204-1097404
(+)
cobalamin
1097530-1099366 (+)
Rsph17029_1065
TonB-dependent receptor
Rsph17029_1065
Operon
DOOR ID:
273688
Rsph17029_1065,
Rsph17029_1066,
Rsph17029_1067,
Rsph17029_1068,
Rsph17029_1069
View Structure
5
1528291-1528485
(+)
cobalamin
1528583-1528943 (+)
Rsph17029_1466
Rsph17029_1466
Operon
DOOR ID:
273764
Rsph17029_1466,
Rsph17029_1467,
Rsph17029_1468
(cobN)
,
Rsph17029_1469
(cobH)
,
Rsph17029_1470,
Rsph17029_1471
View Structure
6
1972534-1972635
(+)
ykkC-yxkD
1972681-1973554 (+)
Rsph17029_1866
Rsph17029_1866
Single gene
DOOR ID:
1973090
Rsph17029_1866
View Structure
7
2435430-2435527
(-)
TPP
2434593-2435382 (-)
Rsph17029_2302
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Rsph17029_2302
Operon
DOOR ID:
273937
Rsph17029_2297,
Rsph17029_2298,
Rsph17029_2299,
Rsph17029_2300,
Rsph17029_2301,
Rsph17029_2302
View Structure
8
2578096-2578303
(+)
cobalamin
2578389-2578806 (+)
Rsph17029_2443
Rsph17029_2443
Operon
DOOR ID:
273963
Rsph17029_2443,
Rsph17029_2444,
Rsph17029_2445
View Structure
Genome:
Rhodobacter sphaeroides ATCC 17029 chromosome I
(
NC_009049.1
);
Phylum:
Alphaproteobacteria
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