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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
163300-163421
(+)
SAH
163502-166241 (+)
Ajs_0147
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Ajs_0147
Operon
DOOR ID:
262053
Ajs_0147,
Ajs_0148
View Structure
2
650534-650615
(+)
SAH
650681-652112 (+)
Ajs_0618
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Ajs_0618
Single gene
DOOR ID:
1951451
Ajs_0618
View Structure
3
1149627-1149871
(+)
cobalamin
1149950-1151831 (+)
Ajs_1096
TonB-dependent receptor
Ajs_1096
Operon
DOOR ID:
262270
Ajs_1096,
Ajs_1097,
Ajs_1098,
Ajs_1099,
Ajs_1100,
Ajs_1101
View Structure
4
1721827-1721986
(-)
ZMP-ZTP
1720547-1721792 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Ajs_1660
Operon
DOOR ID:
262369
Ajs_1659
(nrdR)
,
Ajs_1660
(glyA)
View Structure
5
1855068-1855190
(-)
TPP
1853882-1855007 (-)
Ajs_1786
Glycine oxidase (9)
Ajs_1786
Operon
DOOR ID:
262396
Ajs_1783,
Ajs_1784
(thiG)
,
Ajs_1785,
Ajs_1786
View Structure
6
2031397-2031511
(-)
glycine
2030221-2031352 (-)
Ajs_1938
Glycine cleavage system T protein
Ajs_1938
Operon
DOOR ID:
262424
Ajs_1932,
Ajs_1933,
Ajs_1934,
Ajs_1935,
Ajs_1936,
Ajs_1937,
Ajs_1938
View Structure
7
2031531-2031623
(-)
glycine
2030221-2031352 (-)
Ajs_1938
Glycine cleavage system T protein
Ajs_1938
Operon
DOOR ID:
262424
Ajs_1932,
Ajs_1933,
Ajs_1934,
Ajs_1935,
Ajs_1936,
Ajs_1937,
Ajs_1938
View Structure
8
2395964-2396153
(-)
FMN
2395163-2395835 (-)
Ajs_2261
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Ajs_2261
Single gene
DOOR ID:
1952006
Ajs_2261
View Structure
9
3361627-3361819
(-)
cobalamin
3360820-3361582 (-)
Ajs_3177
Cob(II)yrinic acid a;c-diamide reductase
Ajs_3177
Single gene
DOOR ID:
1952328
Ajs_3177
View Structure
10
3873642-3873751
(-)
TPP
3871695-3873540 (-)
Ajs_3661
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ajs_3661
Single gene
DOOR ID:
1952491
Ajs_3661
View Structure
11
4126361-4126472
(+)
glycine
4126565-4127876 (+)
Ajs_3886
D-amino-acid dehydrogenase
Ajs_3886
Single gene
DOOR ID:
1952557
Ajs_3886
View Structure
12
4412590-4412718
(-)
yybP-ykoY
4411909-4412488 (-)
Ajs_4126
Ajs_4126
Single gene
DOOR ID:
1952659
Ajs_4126
View Structure
Genome:
Acidovorax sp. JS42
(
NC_008782.1
);
Phylum:
Betaproteobacteria
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JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1721827-1721986";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1720547-1721792";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"Ajs_1660";i:14;s:6:"Operon";i:15;s:6:"262369";i:16;s:29:"Ajs_1659(nrdR);Ajs_1660(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1855068-1855190";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1853882-1855007";i:10;s:1:"-";i:11;s:8:"Ajs_1786";i:12;s:19:"Glycine oxidase (9)";i:13;s:8:"Ajs_1786";i:14;s:6:"Operon";i:15;s:6:"262396";i:16;s:41:"Ajs_1783;Ajs_1784(thiG);Ajs_1785;Ajs_1786";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2031397-2031511";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2030221-2031352";i:10;s:1:"-";i:11;s:8:"Ajs_1938";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"Ajs_1938";i:14;s:6:"Operon";i:15;s:6:"262424";i:16;s:62:"Ajs_1932;Ajs_1933;Ajs_1934;Ajs_1935;Ajs_1936;Ajs_1937;Ajs_1938";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2031531-2031623";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2030221-2031352";i:10;s:1:"-";i:11;s:8:"Ajs_1938";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"Ajs_1938";i:14;s:6:"Operon";i:15;s:6:"262424";i:16;s:62:"Ajs_1932;Ajs_1933;Ajs_1934;Ajs_1935;Ajs_1936;Ajs_1937;Ajs_1938";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2395964-2396153";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2395163-2395835";i:10;s:1:"-";i:11;s:8:"Ajs_2261";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"Ajs_2261";i:14;s:11:"Single gene";i:15;s:7:"1952006";i:16;s:8:"Ajs_2261";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3361627-3361819";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3360820-3361582";i:10;s:1:"-";i:11;s:8:"Ajs_3177";i:12;s:40:"Cob(II)yrinic acid a;c-diamide reductase";i:13;s:8:"Ajs_3177";i:14;s:11:"Single gene";i:15;s:7:"1952328";i:16;s:8:"Ajs_3177";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3873642-3873751";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3871695-3873540";i:10;s:1:"-";i:11;s:8:"Ajs_3661";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"Ajs_3661";i:14;s:11:"Single gene";i:15;s:7:"1952491";i:16;s:8:"Ajs_3661";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4126361-4126472";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4126565-4127876";i:10;s:1:"+";i:11;s:8:"Ajs_3886";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:8:"Ajs_3886";i:14;s:11:"Single gene";i:15;s:7:"1952557";i:16;s:8:"Ajs_3886";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_008782.1";i:2;s:20:"Acidovorax sp. JS42 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4412590-4412718";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4411909-4412488";i:10;s:1:"-";i:11;s:8:"Ajs_4126";i:12;s:0:"";i:13;s:8:"Ajs_4126";i:14;s:11:"Single gene";i:15;s:7:"1952659";i:16;s:8:"Ajs_4126";i:17;s:0:"";i:18;s:15:"View Structure ";}}
